7dea7c645f8ce8892d6d4d162a3cf8295309062f
chmalee
  Fri Dec 11 11:22:24 2020 -0800
Bringing repo copies of omim scripts up to date with the working versions, refs #18151

diff --git src/hg/utils/otto/gwas/makefile src/hg/utils/otto/gwas/makefile
index 5599db9..5ed9e41 100644
--- src/hg/utils/otto/gwas/makefile
+++ src/hg/utils/otto/gwas/makefile
@@ -1,23 +1,28 @@
 SUBDIRS = 
 
 all: ${SUBDIRS:%=%.suball}
 
+FILES = gwasWrapper.sh checkGwas.sh validateGwas.sh perlParser.pl expectedColumns.txt
+
 %.suball:
 	${MAKE} -C $* all
 
 install: check-prefix installSub
 	cut -f 1-4 /cluster/data/hg18/bed/snp130/snp130.bed | sort -k4,4 > ${PREFIX}/snp130Coords.bed
 	zcat /cluster/data/hg19/bed/snp151/snp151.bed.gz | cut -f 1-4,6,8,18,21-24   | sort -T ${PREFIX}  -k4,4  > ${PREFIX}/snp151Coords.bed
 	zcat /cluster/data/hg38/bed/snp151/snp151.bed.gz | cut -f 1-4,6,8,18,21-24   | sort -T ${PREFIX}  -k4,4  > ${PREFIX}/hg38.snp151Coords.bed
 	cp gwasWrapper.sh checkGwas.sh validateGwas.sh perlParser.pl expectedColumns.txt ${PREFIX}
 
 installSub: ${SUBDIRS:%=%.install}
 
 %.install:
 	${MAKE} -C $* install
 
+validate: check-prefix
+	$(foreach i, $(FILES), echo $(i); diff ${PREFIX}/$(i) $(i);)
+
 make-prefix: check-prefix
 	mkdir -p ${PREFIX}
 
 check-prefix:
 	@test -n "${PREFIX}" || (echo "must specify PREFIX= to install"; exit 1)