7dea7c645f8ce8892d6d4d162a3cf8295309062f
chmalee
  Fri Dec 11 11:22:24 2020 -0800
Bringing repo copies of omim scripts up to date with the working versions, refs #18151

diff --git src/hg/utils/otto/isca/validateISCA.sh src/hg/utils/otto/isca/validateISCA.sh
index c1def64..2c0f717 100755
--- src/hg/utils/otto/isca/validateISCA.sh
+++ src/hg/utils/otto/isca/validateISCA.sh
@@ -1,45 +1,45 @@
 #!/bin/sh -e
 
 
 db=$1
 cd $db
 tooMuch=0.1000   # how much change (either gain or loss) is too much
 
 for i in `cat ../../isca.tables`
 do 
     checkTableCoords $db -table=$i"New" || exit 1
     #/cluster/home/braney/bin/x86_64/checkTableCoords $db -table=$i"New" || exit 1
     positionalTblCheck $db $i"New" || exit 1
 done 
 
 for i in `cat ../../isca.tables`
 do 
     if test $i == "iscaPathGainCum" -o $i == "iscaPathLossCum" \
          -o $i == "iscaBenignGainCum" -o $i == "iscaBenignLossCum"
     then
 	fields='*'
     else
 	fields="chrom,chromStart,chromEnd,name,score,strand,thickStart,thickEnd"
     fi
     echo "select $fields from $i" |  hgsql $db | tail -n +2 | sort > $i.out
     f=$i"New"
     echo "select $fields from $f" |hgsql $db | tail -n +2 | sort > $f.out
     oldCount=`cat $i.out | wc -l`
     newCount=`cat $f.out | wc -l`
     common=`join -t '\001'  $i.out $f.out | wc -l`
     onlyOld=`join -t '\001' -v 1 $i.out $f.out | wc -l`
     onlyNew=`join -t '\001' -v 2 $i.out $f.out | wc -l`
     echo $i $newCount "-" $onlyNew "=" $common "=" $oldCount "-" $onlyOld  
-#    rm $i.out $f.out
+    rm $i.out $f.out
 done > newISCA.stats
 
 cat newISCA.stats | awk -v db=$db -v tooMuch=$tooMuch ' 
 {
     if (($4/$6 > tooMuch) || ($10/$6 > tooMuch))
 	{
 	print "validate on " db "." $1 " failed:" $4,$6,$4/$6,$10,$6,$10/$6;
 	exit 1
 	}
 }'
 
 exit 0