7dea7c645f8ce8892d6d4d162a3cf8295309062f
chmalee
  Fri Dec 11 11:22:24 2020 -0800
Bringing repo copies of omim scripts up to date with the working versions, refs #18151

diff --git src/hg/utils/otto/omim/makefile src/hg/utils/otto/omim/makefile
index 0100839..0d9bc13 100644
--- src/hg/utils/otto/omim/makefile
+++ src/hg/utils/otto/omim/makefile
@@ -1,29 +1,33 @@
 SUBDIRS = doOmimGene2 doOmimGeneSymbols doOmimLocation
 PREFIX = /hive/data/outside/omim
 
 all: ${SUBDIRS:%=%.suball}
+FILES = omimWrapper.sh omim.tables checkOmim.sh validateOmim.sh parseGeneMap.pl omimUploadWrapper.sh checkOmimUpload.sh doOmimPhenotypeNew buildOmimTracks.sh flagOmimGene.py
 
 %.suball:
 	${MAKE} -C $* all
 
 # any changes must be committed (and this is checked).
 install: check-prefix installSub
 	cp omimWrapper.sh omim.tables checkOmim.sh validateOmim.sh parseGeneMap.pl omimUploadWrapper.sh checkOmimUpload.sh doOmimPhenotypeNew buildOmimTracks.sh flagOmimGene.py ${PREFIX}
 	cp ../../../lib/{omimGeneMap,omimGeneMap2,omim2gene,omimGeneSymbol,omimPhenotype,omimAv}.sql ${PREFIX}
 
 installSub: ${SUBDIRS:%=%.install}
 
 %.install:
 	${MAKE} -C $* install
 
+validate: check-prefix
+	$(foreach i, $(FILES), echo $(i); diff ${PREFIX}/$(i) $(i);)
+
 make-prefix: check-prefix
 	mkdir -p ${PREFIX}
 	mkdir -p ${PREFIX}/sql
 
 check-prefix:
 	@test -n "${PREFIX}" || (echo "must specify PREFIX= to install"; exit 1)
 
 clean:
 	rm -f doOmimGene2/doOmimGene2
 	rm -f doOmimGeneSymbols/doOmimGeneSymbols
 	rm -f doOmimLocation/doOmimLocation