8e55ded7b333f5f621a85a5190f68a714ab19b9b gperez2 Tue Dec 22 17:48:41 2020 -0800 Renamed the autoSql definition file name for bigLolly.html, refs #26481 diff --git src/hg/htdocs/goldenPath/help/bigLolly.html src/hg/htdocs/goldenPath/help/bigLolly.html index a8b0d2d..b139af2 100755 --- src/hg/htdocs/goldenPath/help/bigLolly.html +++ src/hg/htdocs/goldenPath/help/bigLolly.html @@ -35,31 +35,31 @@ documentation.</p> <h2>Contents</h2> <h6><a href="#bigLolly">bigLolly format definition</a></h6> <h6><a href="#creating_bigLolly">Creating a bigLolly track</a></h6> <h6><a href="#sharing_data">Sharing your data with others</a></h6> <h6><a href="#extracting_data">Extracting data from the bigLolly format</a></h6> <h6><a href="#troubleshooting">Troubleshooting</a></h6> <a name=bigLolly></a> <h2>bigLolly format definition</h2> <p> Any bigBed file can be displayed as a bigLolly. See <a href="bigBed.html">bigBed format</a>. The following autoSql definition is an example on how to specify bigLolly files. This -definition, contained in the file <a href="examples/bigLollyFormatDef.as"><em>bigLolly.as</em></a>, +definition, contained in the file <a href="examples/bigLolly.as"><em>bigLolly.as</em></a>, is pulled in when the <code>bedToBigBed</code> utility is run with the <code>-as=bigLolly.as</code> option.</p> <pre><code> table bigLolly "bigLolly lollipops" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chrom" uint chromEnd; "End position in chrom" string name; "dbSNP Reference SNP (rs) identifier or <chromNum>:<pos>" uint score; "Score from 0-1000, derived from p-value" char[1] strand; "Unused. Always '.'" uint thickStart; "Start position in chrom" uint thickEnd; "End position in chrom" uint color; "Red (positive effect) or blue (negative). Brightness reflects pvalue"