60ac6fcbb6586c38b9b2de9b3464e3425997c519 gperez2 Wed Dec 9 15:55:43 2020 -0800 Updating news for neoSch1, refs #19883 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index b097b8a..f2853a9 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,76 @@ <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2020 archived news ============= --> <a name="2020"></a> +<a name="120920"></a> +<h2>Dec. 9, 2020 New Genome Browser: Hawaiian monk seal, neoSch1 (<em>Neomonachus schauinslandi</em>)</h2> +<p> +A genome browser is now available for the Hawaiian monk seal (<em>Neomonachus schauinslandi</em>) assembly +released in Jun. 2017 by the +<a href="https://www.hopkinsmedicine.org/profiles/results/directory/profile/5985613/alan-scott" +target="_blank">Johns Hopkins University</a> (ASM220157v1). +<h3>About the assembly:</h3> +<ul> + <li><b>UCSC Genome Browser assembly ID:</b> <a href="../../cgi-bin/hgGateway?db=neoSch1" + target="_blank">neoSch1</a></li> + <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.jhu.edu/"> +Johns Hopkins University</a></li> + <li><b>Assembly date:</b> Jun. 2017</li> + <li><B>Accession ID:</B> GCF_002201575.1</li> + <li><B>NCBI Genome ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/genome/8042" +TARGET="_blank">8042</A> (<em>Neomonachus schauinslandi</em>)</li> + <li><B>NCBI Assembly ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/assembly/GCF_002201575.1/" +TARGET="_blank">1137021</A></li> + <li><B>NCBI BioProject ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/bioproject/384558" +TARGET="_blank">384558</A></li> + <li><B>NCBI BioSample ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/biosample/SAMN06841387" +TARGET="_blank">SAMN06841387</A></li> + <li><b>Scaffold count: </b>7,873</li> + <li><b>Total size: </b>2,400,934,290</li> + <li><a href="../goldenPath/credits.html#hawaiian_monk_seal_credits" +target="_blank" >Acknowledgments</a></li> +</ul> +<h3>Data and Downloads:</h3> +<ul> + <li><a href="../goldenPath/credits.html#hawaiian_monk_seal_use" +target="_blank" >Data use conditions and restrictions</a></li> + <li><a href="../goldenPath/help/ftp.html" +target="_blank" >Rsync</a> and +<a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/neoSch1/" +target="_blank" >FTP</a></li> + <li><a href="http://hgdownload.soe.ucsc.edu/downloads.html#hawaiian_monk_seal" +target="_blank" >Downloads page</a></li> +</ul> +</p> +<p> +We would like to thank Alan F. Scott at Johns Hopkins University and NCBI for creating this new Hawaiian +monk seal assembly. We would also like to thank Hiram Clawson, Robert Kuhn, and Gerardo +Perez for the development and release of the neoSch1 genome browser. +</p> + <a name="120220"></a> <h2>Dec. 2, 2020 New and updated UniProt tracks for 117 assemblies</h2> <p> We are pleased to announce new and updated <a href="https://www.uniprot.org/" target="_blank"</a>UniProt tracks</a> for the following assemblies:</p><br> <div class="container"> <div class="row"> <div class="col-sm-4"> <ul> <li>A. gambiae <a href="../cgi-bin/hgTrackUi?db=anoGam1&g=uniprot" target=_blank>(anoGam1)</a></li> <li>A. gambiae <a href="../cgi-bin/hgTrackUi?db=anoGam3&g=uniprot" target=_blank>(anoGam3)</a></li> <li>A. mellifera <a href="../cgi-bin/hgTrackUi?db=apiMel2&g=uniprot"