4249ea7c261b62acbdff737b76468640e7ffa9eb
hiram
  Mon Dec 7 13:18:05 2020 -0800
adding annotations from Lindblad-Toh lab refs #26657

diff --git src/hg/makeDb/doc/canFam4/initialBuild.txt src/hg/makeDb/doc/canFam4/initialBuild.txt
index 812fcfa..8f111b4 100644
--- src/hg/makeDb/doc/canFam4/initialBuild.txt
+++ src/hg/makeDb/doc/canFam4/initialBuild.txt
@@ -1133,19 +1133,19 @@
 
     ln -s `pwd`/28ChromiumDogs.filtered.b614.simple.NoMishcka.vcf.gz \
 	/gbdb/canFam4/bbi/altAllele/
     ln -s `pwd`/28ChromiumDogs.filtered.b614.simple.NoMishcka.vcf.gz.tbi \
 	/gbdb/canFam4/bbi/altAllele/
 
     hgBbiDbLink canFam4 altAllele \
 	/gbdb/canFam4/bbi/altAllele/28ChromiumDogs.filtered.b614.simple.NoMishcka.vcf.gz
 
     grep -v "^track" SVs.ind1.cf4b614.simple.bed.ucsc.bed \
 	| hgLoadBed -allowStartEqualEnd -type=bed4 canFam4 structVar stdin
 
     grep -v "^track" UU_GSD1.0_gene_annotation.bed \
 	| hgLoadBed -type=bed12 canFam4 uuGene stdin
  
-    grep -v "^track" GSD1.0_july1_reduced_number.bed \
-	| hgLoadBed -type=bed12 canFam4 uuGeneReduced stdin
+    grep -v "^track" filled_cf3.1_gaps.bed \
+	| hgLoadBed -type=bed3 canFam4 filledGaps stdin
 
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