f6d8c8393632dfff192a1287ecce346cb83469d9
hiram
  Tue Dec 8 11:09:16 2020 -0800
try using bigPsl display parameters as used by blat custom track refs #24672

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 18ca53f..a62e8e1 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -3170,34 +3170,36 @@
 dataVersion miRBase Release 13.0 (March 2009) and snoRNABase Version 3
 
 track lrgBigPsl
 shortLabel LRG Transcripts (RM 24672)
 longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations (RedMine 24672)
 group genes
 visibility hide
 type bigPsl
 mouseOverField mouseOver
 skipFields mouseOver
 skipEmptyFields on
 urls ncbiTranscript=https://www.ncbi.nlm.nih.gov/nuccore/$$ ensemblTranscript=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$ ncbiProtein=https://www.ncbi.nlm.nih.gov/protein/$$ ensemblProtein=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$
 cdsTable lrgCds
 cdnaTable lrgCdna
 pepTable lrgPep
-baseColorDefault diffCodons
+altColor 127,127,127
+baseColorDefault diffBases
+baseColorUseSequence lfExtra
 baseColorUseCds table lrgCds
-baseColorUseSequence table lrgCdna
 indelDoubleInsert on
+indelPolyA on
 indelQueryInsert on
 showDiffBasesAllScales .
 showDiffBasesMaxZoom 10000.0
 showCdsAllScales .
 showCdsMaxZoom 10000.0
 color 54,125,29
 urlLabel Link to LRG transcript:
 url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor
 
 track lrgTranscriptAli
 shortLabel LRG Transcripts
 longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations
 group genes
 visibility hide
 type psl .