e1bad6bcd71bef15344d18cd16d2e416b9840078 hiram Mon Dec 14 19:00:35 2020 -0800 a copy of index.html from hgdownload (generated there by script) update to today refs #23891 diff --git src/hg/makeDb/doc/asmHubs/hgdownload.index.html src/hg/makeDb/doc/asmHubs/hgdownload.index.html new file mode 100755 index 0000000..734cfa6 --- /dev/null +++ src/hg/makeDb/doc/asmHubs/hgdownload.index.html @@ -0,0 +1,75 @@ +<!DOCTYPE HTML 4.01 Transitional> +<!--#set var="TITLE" value="U.C. Santa Cruz Genomics Institute Assembly and Track hubs" --> +<!--#set var="ROOT" value=".." --> + +<!--#include virtual="$ROOT/inc/gbPageStartHardcoded.html" --> + +<h1>U.C. Santa Cruz Genomics Institute Assembly and Track hubs</h1> + +<table class='sortable' border='1'> +<thead> + <th>hub gateway</th> + <th>description</th> +</tr></thead><tbody> +<tr> + <td><a href='primates/index.html' target=_blank>primates</a></td> + <td>NCBI primate genomes (28 assemblies)</td> +</tr> +<tr> + <td><a href='mammals/index.html' target=_blank>mammals</a></td> + <td>NCBI mammal genomes (115 assemblies)</td> +</tr> +<tr> + <td><a href='birds/index.html' target=_blank>birds</a></td> + <td>NCBI bird genomes (72 assemblies)</td> +</tr> +<tr> + <td><a href='fish/index.html' target=_blank>fishes</a></td> + <td>NCBI fish genomes (86 assemblies)</td> +</tr> +<tr> + <td><a href='vertebrate/index.html' target=_blank>vertebrate</a></td> + <td>NCBI other vertebrate genomes (28 assemblies)</td> +</tr> +<tr> + <td><a href='legacy/index.html' target=_blank>legacy</a></td> + <td>NCBI genomes legacy/superseded by newer versions (16 assemblies)</td> +</tr> +<tr> + <td><a href='plants/index.html' target=_blank>plants</a></td> + <td>NCBI plant genomes (105 assemblies)</td> +</tr> +<tr> + <td><a href='VGP/index.html' target=_blank>VGP</a></td> + <td>Vertebrate Genomes Project collection (188 assemblies)</td> +</tr> +<tr> + <td><a href='globalReference/index.html' target=_blank>globalReference</a></td> + <td>Global Human Reference genomes, January 2020 (10 assemblies)</td> +</tr> +<tr> + <td><a href='mouseStrains/hubIndex.html' target=_blank>mouseStrains</a></td> + <td>16 mouse strain assembly and track hub, May 2017</td> +</tr> +<tr> + <td><a href='gtexAnalysis/index.html' target=_blank>gtexAnalysis</a></td> + <td>Genotype-Tissue Expression (GTEx) Project analysis results track hub, V6 October 2015</td> +</tr> +<tr> + <td><a href='gtex/index.html' target=_blank>gtex</a></td> + <td>Genotype-Tissue Expression (GTEx) RNA-seq signal track hub, V6 October 2015</td> +</tr> +<tr> + <td><a href='neuroDiffCrispr/index.html' target=_blank>neuroDiffCrispr</a></td> + <td>Structurally conserved primate cerebral cortex lincRNAs track hub, December 2018</td> +</tr> +</tbody></table> +<p> +Please note: text file <a href='UCSC_GI.assemblyHubList.txt' target=_blank>listing</a> of 608 NCBI/VGP genome assembly hubs +</p> + +</div><!-- closing gbsPage from gbPageStartHardcoded.html --> +</div><!-- closing container-fluid from gbPageStartHardcoded.html --> +<!--#include virtual="$ROOT/inc/gbFooterHardcoded.html"--> +<script type="text/javascript" src="/js/sorttable.js"></script> +</body></html>