9c54f7b9a4adb03a98fe14179ae1426a804854bf
kate
  Mon Dec 7 15:18:35 2020 -0800
Add track for recently  released data (Release 4, October 2020). refs #26129

diff --git src/hg/makeDb/trackDb/human/covidHgiGwas.ra src/hg/makeDb/trackDb/human/covidHgiGwas.ra
index e93a0f1..023b66f 100644
--- src/hg/makeDb/trackDb/human/covidHgiGwas.ra
+++ src/hg/makeDb/trackDb/human/covidHgiGwas.ra
@@ -1,41 +1,76 @@
+track covidHgiGwasR4
+shortLabel COVID GWAS R4
+longLabel GWAS meta-analyses Release 3 (Oct 2020) from the COVID-19 Host Genetics Initiative
+compositeTrack on
+group covid
+visibility hide
+autoScale on
+maxHeightPixels 48:75:128
+pennantIcon New red
+type bigLolly 9 +
+lollyField 21
+mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount
+maxItems 500000
+filter.sourceCount 1
+filterLabel.sourceCount Minimum number of studies
+filter.pValueLog 3
+# changeme
+filter.effectSize -13:21
+filterLimits.effectSize -13:21
+filterLabel.effectSize Effect size range
+filterByRange.effectSize on
+filter._effectSizeAbs 0
+filterLabel._effectSizeAbs Minimum effect size +-
+noScoreFilter on
+bedNameLabel SNP
+chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22
+
+    track covidHgiGwasR4C2
+    parent covidHgiGwasR4 on
+    shortLabel COVID GWAS R4
+    longLabel COVID GWAS Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative (17965 cases, 33 studies)
+    bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C2.$D.bb
+
+    track covidHgiGwasR4B2
+    parent covidHgiGwasR4 off
+    shortLabel Hosp COVID GWAS R4
+    longLabel Hospitalized COVID GWAS Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative (XX cases, XX studies)
+    bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4B2.$D.bb
+
 track covidHgiGwas
 shortLabel COVID-19 GWAS
 longLabel GWAS meta-analyses from the COVID-19 Host Genetics Initiative
 compositeTrack on
 group covid
 visibility hide
 autoScale on
 maxHeightPixels 48:75:128
-pennantIcon New red ../goldenPath/newsarch.html#092520 "Released Sep. 25, 2020"
 type bigLolly 9 +
 lollyField 21
-# V2
-#lollySizeField 20
-#lollyMaxSize 8
 mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount
 maxItems 500000
 filter.sourceCount 1
 filterLabel.sourceCount Minimum number of studies
 filter.pValueLog 3
-filter.effectSize -13:21
+filter.effectSize -1.6:2.2
 filterLabel.effectSize Effect size range
 filterByRange.effectSize on
-filterLimits.effectSize -13:21
+filterLimits.effectSize -1.6:2.2
 filter._effectSizeAbs 0
 filterLabel._effectSizeAbs Minimum effect size +-
 noScoreFilter on
 bedNameLabel SNP
 chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22
 
     track covidHgiGwasC2
-    parent covidHgiGwas
+    parent covidHgiGwas on
     shortLabel COVID GWAS
     longLabel COVID GWAS from the COVID-19 Host Genetics Initiative (6696 cases, 18 studies)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasC2.$D.bb
 
     track covidHgiGwasB2
-    parent covidHgiGwas
+    parent covidHgiGwas off
     shortLabel Hosp COVID GWAS
     longLabel Hospitalized COVID GWAS from the COVID-19 Host Genetics Initiative (3199 cases, 8 studies)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasB2.$D.bb