ee754a9166c5d010129381cf231715d2588dcfef
kate
  Tue Dec 22 12:40:01 2020 -0800
Add links gene regions on description page (by Ana). refs #26616

diff --git src/hg/makeDb/trackDb/human/covidHgiGwasR4Pval.html src/hg/makeDb/trackDb/human/covidHgiGwasR4Pval.html
index f900b33..57abb31 100644
--- src/hg/makeDb/trackDb/human/covidHgiGwasR4Pval.html
+++ src/hg/makeDb/trackDb/human/covidHgiGwasR4Pval.html
@@ -36,90 +36,88 @@
  study and are shown below (table adapted from 
  <a target="_blank" href="https://www.nature.com/articles/s41586-020-03065-y">Pairo-Castineira <em>et. al.</em></a>).
 </li>
 
 <table class="stdTbl">
   <tr>
     <th>SNP</th>
     <th>Human GRCh37/hg19 Assembly</th>
     <th>Human GRCh38/hg38 Assembly</th>
     <th>Risk Alelle</th>
     <th>Alternative</th>
     <th>Gene nearest to SNP</th>
   </tr>
   <tr>
     <td>rs73064425</td>
-    <td>chr3:45901089-45901089</td>
-    <td>chr3:45859597-45859597</td>
+    <td><a href="../cgi-bin/hgTracks?db=hg19&covidHgiGwasR4Pval=pack&position=chr3:45901089-45901089">chr3:45901089-45901089</a></td>
+    <td><a href="../cgi-bin/hgTracks?db=hg38&covidHgiGwasR4Pval=pack&position=chr3:45859597-45859597">chr3:45859597-45859597</a></td>
     <td>T</td>
     <td>C</td>
     <td>LZTFL1</td>
   </tr>
   <tr>
     <td>rs9380142</td>
-    <td>chr6:29798794-29798794</td>
-    <td>chr6:29831017-29831017</td>
+    <td><a href="../cgi-bin/hgTracks?db=hg19&covidHgiGwasR4Pval=pack&position=chr6:29798794-29798794">chr6:29798794-29798794</a></td>
+    <td><a href="../cgi-bin/hgTracks?db=hg38&covidHgiGwasR4Pval=pack&position=chr6:29831017-29831017">chr6:29831017-29831017</a></td>
     <td>A</td>
     <td>G</td>
     <td>HLA-G</td>
   </tr>
   <tr>
     <td>rs143334143</td>
-    <td>chr6:31121426-31121426</td>
-    <td>chr6:31153649-31153649</td>
+    <td><a href="../cgi-bin/hgTracks?db=hg19&covidHgiGwasR4Pval=pack&position=chr6:31121426-31121426">chr6:31121426-31121426</a></td>
+    <td><a href="../cgi-bin/hgTracks?db=hg38&covidHgiGwasR4Pval=pack&position=chr6:31153649-31153649">chr6:31153649-31153649</a></td>
     <td>A</td>
     <td>G</td>
     <td>CCHCR1</td>
   </tr>
   <tr>
    <td>rs3131294</td>
-    <td><a href="">
-chr6:32180146-32180146</a></td>
-    <td><a href="">
-chr6:32212369-32212369</a></td>
+    <td><a href="../cgi-bin/hgTracks?db=hg19&covidHgiGwasR4Pval=pack&position=chr6:32180146-32180146">chr6:32180146-32180146</a></td>
+    <td><a href="../cgi-bin/hgTracks?db=hg38&covidHgiGwasR4Pval=pack&position=chr6:32212369-32212369">chr6:32212369-32212369</a></td>
     <td>G</td>
     <td>A</td>
     <td>NOTCH4</td>
    </tr>
    <tr>
     <td>rs10735079</td>
-    <td>chr12:113380008-113380008</td>
-    <td>chr12:112942203-112942203</td>
+    <td><a href="../cgi-bin/hgTracks?db=hg19&covidHgiGwasR4Pval=pack&position=chr12:113380008-113380008">chr12:113380008-113380008</a></td>
+    <td><a href="../cgi-bin/hgTracks?db=hg38&covidHgiGwasR4Pval=pack&position=chr12:112942203-112942203">chr12:112942203-112942203</a></td>
     <td>A</td>
     <td>G</td>
     <td>OAS3</td>
    </tr>
    <tr>
     <td>rs74956615</td>
-    <td>chr19:10427721-10427721</td>
-    <td>chr19:10317045-10317045</td>
+    <td><a href="../cgi-bin/hgTracks?db=hg19&covidHgiGwasR4Pval=pack&position=chr19:10427721-10427721">chr19:10427721-10427721</a></td>
+    <td><a href="../cgi-bin/hgTracks?db=hg38&covidHgiGwasR4Pval=pack&position=chr19:10317045-10317045">chr19:10317045-10317045</a></td>
     <td>A</td>
     <td>T</td>
     <td>ICAM5/TYK2</td>
    </tr>
    <tr>
     <td>rs2109069</td>
-    <td>chr19:4719443-4719443</td>
-    <td>chr19:4719431-4719431</td>
+    <td><a href="../cgi-bin/hgTracks?db=hg19&covidHgiGwasR4Pval=pack&position=chr19:4719443-4719443">chr19:4719443-4719443</a></td>
+    <td><a href="../cgi-bin/hgTracks?db=hg38&covidHgiGwasR4Pval=pack&position=chr19:4719431-4719431">chr19:4719431-4719431</a></td>
     <td>A</td>
     <td>G</td>
     <td>DPP9</td>
    </tr>
    <tr>
     <td>rs2236757</td>
-    <td>chr21:34624917-34624917</td>
-    <td>chr21:33252612-33252612</td>
+    <td><a href="../cgi-bin/hgTracks?db=hg19&covidHgiGwasR4Pval=pack&position=chr21:34624917-34624917">chr21:34624917-34624917</a></td>
+    <td><a href="../cgi-bin/hgTracks?db=hg38&covidHgiGwasR4Pval=pack&position=chr21:33252612-33252612">chr21:33252612-33252612</a></td>
     <td>A</td>
     <td>G</td>
     <td>IFNAR2</td>
    </tr>
 </table>
 </p>
 <p>
 <li><b>Hosp COVID vars (B2):</b> Cases hospitalized and confirmed for COVID-19 vs. 
 population (i.e. everybody that is not a case)</li>
 </p>
 <p>
 <li><b>Tested COVID vars (C1):</b> Cases with laboratory confirmed SARS-CoV-2 infection, or 
 health record/phisician-confirmed COVID-19, or self-reported COVID-19 via questionare vs. laboratory
 /self-reported negative cases</li>
 </p>