3a05d18b3a907bdd6868dac95dfe983dcc52d73f kate Fri Dec 18 19:30:27 2020 -0800 Polishing up COVID GWAS Oct 2020 track(s). refs #26616 diff --git src/hg/makeDb/trackDb/human/covidHgiGwas.ra src/hg/makeDb/trackDb/human/covidHgiGwas.ra index 27af32a..ece877b 100644 --- src/hg/makeDb/trackDb/human/covidHgiGwas.ra +++ src/hg/makeDb/trackDb/human/covidHgiGwas.ra @@ -1,123 +1,152 @@ track covidHgiGwasR4Pval +html covidHgiGwasR4 release alpha shortLabel COVID GWAS Pval -longLabel GWAS meta-analyses (by Pvalue) Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative +longLabel GWAS meta-analyses (by Pvalue) Release 4 (Oct 2020) from COVID-19 Host Genetics Initiative compositeTrack on group covid visibility hide autoScale on maxHeightPixels 48:75:128 pennantIcon New red type bigLolly 9 + lollyField 13 mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount maxItems 500000 viewLimits 0:10 filter.sourceCount 1 filterLabel.sourceCount Minimum number of studies filter.pValueLog 3 filter.effectSize -1.6:2.2 filterLimits.effectSize -1.6:2.2 filterLabel.effectSize Effect size range filterByRange.effectSize on filter._effectSizeAbs 0 filterLabel._effectSizeAbs Minimum effect size +- noScoreFilter on bedNameLabel SNP chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22 track covidHgiGwasR4PvalC2 release alpha parent covidHgiGwasR4Pval on shortLabel COVID GWAS R4 Pval - longLabel COVID GWAS Pvalue Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative (17965 cases, 33 studies) + longLabel COVID GWAS Pvalue Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis C2: 17965 cases, 33 studies) bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C2.$D.EC.bb track covidHgiGwasR4PvalB2 release alpha - parent covidHgiGwasR4Pval off + parent covidHgiGwasR4Pval on shortLabel Hosp COVID GWAS R4 Pval - longLabel Hospitalized COVID GWAS Pvalue Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative (7885 cases, 21 studies) + longLabel Hospitalized COVID GWAS Pvalue Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis B2: 7885 cases, 21 studies) bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4B2.$D.EC.bb + track covidHgiGwasR4PvalA2 + release alpha + parent covidHgiGwasR4Pval on + shortLabel Severe COVID GWAS R4 Pval + longLabel Very severe respiratory COVID GWAS Pvalue Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis A2: 4336 cases, 12 studies) + bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4A2.$D.EC.bb + + track covidHgiGwasR4PvalC1 + release alpha + parent covidHgiGwasR4Pval on + shortLabel Tested COVID GWAS R4 Pval + longLabel Tested GWAS Pvalue (Analysis C1) Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (11085 cases: 20 studies) + bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C1.$D.EC.bb + track covidHgiGwasR4 release alpha shortLabel COVID GWAS R4 -longLabel GWAS meta-analyses (by Effect size) Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative +longLabel GWAS meta-analyses (by effect size) Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative compositeTrack on group covid visibility hide autoScale on maxHeightPixels 48:75:128 pennantIcon New red type bigLolly 9 + lollyField 21 mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount maxItems 500000 filter.sourceCount 1 filterLabel.sourceCount Minimum number of studies filter.pValueLog 3 viewLimits 0:2.2 filter.effectSize -1.6:2.2 filterLimits.effectSize -1.6:2.2 filterLabel.effectSize Effect size range filterByRange.effectSize on filter._effectSizeAbs 0 filterLabel._effectSizeAbs Minimum effect size +- noScoreFilter on bedNameLabel SNP chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22 track covidHgiGwasR4C2 release alpha parent covidHgiGwasR4 on shortLabel COVID GWAS R4 - longLabel COVID GWAS Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative (17965 cases, 33 studies) + longLabel COVID GWAS Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis C2: 17965 cases, 33 studies) bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C2.$D.bb track covidHgiGwasR4B2 release alpha - parent covidHgiGwasR4 off + parent covidHgiGwasR4 on shortLabel Hosp COVID GWAS R4 - longLabel Hospitalized COVID GWAS Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative (7885 cases, 21 studies) + longLabel Hospitalized COVID GWAS Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis B2: 7885 cases, 21 studies) bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4B2.$D.bb + track covidHgiGwasR4A2 + release alpha + parent covidHgiGwasR4 on + shortLabel Severe COVID GWAS R4 + longLabel Very severe respiratory COVID GWAS Release 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis A2: 4336 cases, 12 studies) + bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4A2.$D.bb + + track covidHgiGwasR4C1 + release alpha + parent covidHgiGwasR4 on + shortLabel Tested COVID GWAS R4 + longLabel Tested GWAS Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis C1: 11085 cases, 20 studies) + bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C1.$D.bb + track covidHgiGwas shortLabel COVID-19 GWAS longLabel GWAS meta-analyses from the COVID-19 Host Genetics Initiative compositeTrack on group covid visibility hide autoScale on maxHeightPixels 48:75:128 type bigLolly 9 + lollyField 21 mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount maxItems 500000 filter.sourceCount 1 filterLabel.sourceCount Minimum number of studies filter.pValueLog 3 viewLimits -13:21 filter.effectSize -13:21 filterLimits.effectSize -13:21 filterLabel.effectSize Effect size range filterByRange.effectSize on filter._effectSizeAbs 0 filterLabel._effectSizeAbs Minimum effect size +- noScoreFilter on bedNameLabel SNP chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22 track covidHgiGwasC2 parent covidHgiGwas on shortLabel COVID GWAS longLabel COVID GWAS from the COVID-19 Host Genetics Initiative (6696 cases, 18 studies) bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasC2.$D.bb track covidHgiGwasB2 parent covidHgiGwas off shortLabel Hosp COVID GWAS longLabel Hospitalized COVID GWAS from the COVID-19 Host Genetics Initiative (3199 cases, 8 studies) bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasB2.$D.bb