67486cac9734e8590a43442a31ee396eedd714e1 kate Mon Dec 21 12:44:41 2020 -0800 Polish track labels and subtrack ordering after Ana consult. refs #26616 diff --git src/hg/makeDb/trackDb/human/covidHgiGwas.ra src/hg/makeDb/trackDb/human/covidHgiGwas.ra index ece877b..68d81ba 100644 --- src/hg/makeDb/trackDb/human/covidHgiGwas.ra +++ src/hg/makeDb/trackDb/human/covidHgiGwas.ra @@ -1,152 +1,98 @@ track covidHgiGwasR4Pval -html covidHgiGwasR4 release alpha -shortLabel COVID GWAS Pval -longLabel GWAS meta-analyses (by Pvalue) Release 4 (Oct 2020) from COVID-19 Host Genetics Initiative +shortLabel COVID GWAS Oct 2020 +longLabel COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020) compositeTrack on group covid visibility hide autoScale on maxHeightPixels 48:75:128 pennantIcon New red type bigLolly 9 + lollyField 13 mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount maxItems 500000 viewLimits 0:10 filter.sourceCount 1 filterLabel.sourceCount Minimum number of studies filter.pValueLog 3 filter.effectSize -1.6:2.2 filterLimits.effectSize -1.6:2.2 filterLabel.effectSize Effect size range filterByRange.effectSize on filter._effectSizeAbs 0 filterLabel._effectSizeAbs Minimum effect size +- noScoreFilter on bedNameLabel SNP chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22 - track covidHgiGwasR4PvalC2 + track covidHgiGwasR4PvalA2 release alpha parent covidHgiGwasR4Pval on - shortLabel COVID GWAS R4 Pval - longLabel COVID GWAS Pvalue Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis C2: 17965 cases, 33 studies) - bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C2.$D.EC.bb + shortLabel Severe COVID vars + longLabel Severe respiratory COVID risk variants from the COVID-19 HGI GWAS Analysis A2 (4336 cases, 12 studies, Rel 4: Oct 2020) + bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4A2.$D.EC.bb + priority 1 track covidHgiGwasR4PvalB2 release alpha parent covidHgiGwasR4Pval on - shortLabel Hosp COVID GWAS R4 Pval - longLabel Hospitalized COVID GWAS Pvalue Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis B2: 7885 cases, 21 studies) + shortLabel Hosp COVID vars + longLabel Hospitalized COVID risk variants from the COVID-19 HGI GWAS Analysis B2 (7885 cases, 21 studies, Rel 4: Oct 2020) bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4B2.$D.EC.bb - - track covidHgiGwasR4PvalA2 - release alpha - parent covidHgiGwasR4Pval on - shortLabel Severe COVID GWAS R4 Pval - longLabel Very severe respiratory COVID GWAS Pvalue Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis A2: 4336 cases, 12 studies) - bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4A2.$D.EC.bb + priority 2 track covidHgiGwasR4PvalC1 release alpha parent covidHgiGwasR4Pval on - shortLabel Tested COVID GWAS R4 Pval - longLabel Tested GWAS Pvalue (Analysis C1) Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (11085 cases: 20 studies) + shortLabel Tested COVID vars + longLabel Tested COVID risk variants from the COVID-19 HGI GWAS Analyis C1 (11085 cases, 20 studies, Rel 4: Oct 2020) bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C1.$D.EC.bb + priority 3 -track covidHgiGwasR4 -release alpha -shortLabel COVID GWAS R4 -longLabel GWAS meta-analyses (by effect size) Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative -compositeTrack on -group covid -visibility hide -autoScale on -maxHeightPixels 48:75:128 -pennantIcon New red -type bigLolly 9 + -lollyField 21 -mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount -maxItems 500000 -filter.sourceCount 1 -filterLabel.sourceCount Minimum number of studies -filter.pValueLog 3 -viewLimits 0:2.2 -filter.effectSize -1.6:2.2 -filterLimits.effectSize -1.6:2.2 -filterLabel.effectSize Effect size range -filterByRange.effectSize on -filter._effectSizeAbs 0 -filterLabel._effectSizeAbs Minimum effect size +- -noScoreFilter on -bedNameLabel SNP -chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22 - - track covidHgiGwasR4C2 - release alpha - parent covidHgiGwasR4 on - shortLabel COVID GWAS R4 - longLabel COVID GWAS Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis C2: 17965 cases, 33 studies) - bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C2.$D.bb - - track covidHgiGwasR4B2 - release alpha - parent covidHgiGwasR4 on - shortLabel Hosp COVID GWAS R4 - longLabel Hospitalized COVID GWAS Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis B2: 7885 cases, 21 studies) - bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4B2.$D.bb - - track covidHgiGwasR4A2 - release alpha - parent covidHgiGwasR4 on - shortLabel Severe COVID GWAS R4 - longLabel Very severe respiratory COVID GWAS Release 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis A2: 4336 cases, 12 studies) - bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4A2.$D.bb - - track covidHgiGwasR4C1 + track covidHgiGwasR4PvalC2 release alpha - parent covidHgiGwasR4 on - shortLabel Tested COVID GWAS R4 - longLabel Tested GWAS Rel 4 (Oct 2020) from COVID-19 Host Genetics Initiative (Analysis C1: 11085 cases, 20 studies) - bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C1.$D.bb - + parent covidHgiGwasR4Pval on + shortLabel All COVID vars + longLabel COVID risk variants from the COVID-19 HGI GWAS Analysis C2 (17965 cases, 33 studies, Rel 4: Oct 2020) + bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C2.$D.EC.bb + priority 4 track covidHgiGwas shortLabel COVID-19 GWAS longLabel GWAS meta-analyses from the COVID-19 Host Genetics Initiative compositeTrack on group covid visibility hide autoScale on maxHeightPixels 48:75:128 type bigLolly 9 + lollyField 21 mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount maxItems 500000 filter.sourceCount 1 filterLabel.sourceCount Minimum number of studies filter.pValueLog 3 viewLimits -13:21 filter.effectSize -13:21 filterLimits.effectSize -13:21 filterLabel.effectSize Effect size range filterByRange.effectSize on filter._effectSizeAbs 0 filterLabel._effectSizeAbs Minimum effect size +- noScoreFilter on bedNameLabel SNP chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22 track covidHgiGwasC2 parent covidHgiGwas on shortLabel COVID GWAS longLabel COVID GWAS from the COVID-19 Host Genetics Initiative (6696 cases, 18 studies) bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasC2.$D.bb track covidHgiGwasB2 parent covidHgiGwas off shortLabel Hosp COVID GWAS longLabel Hospitalized COVID GWAS from the COVID-19 Host Genetics Initiative (3199 cases, 8 studies) bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasB2.$D.bb