73d60270fcd4c7a026ba90a953681d8c4e5236b6 lrnassar Mon Dec 14 12:51:22 2020 -0800 News announcement for GENCODE V35 refs #26524 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 101abb6..c2e24d3 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,54 @@ <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2020 archived news ============= --> <a name="2020"></a> +<a name="121520"></a> +<h2>Dec. 15, 2020 New V35 GENCODE genes track for Human (hg19/GRCh37)</h2> +<p> +We are pleased to announce a new GENCODE Genes annotation track, which corresponds +to <a href="http://www.ensembl.info/2020/08/20/ensembl-101-has-been-released/" +target="_blank">Ensembl 101</a>, for the: <a target="_blank" +href="../../cgi-bin/hgTrackUi?db=hg19&c=chr21&g=wgEncodeGencodeV35lift37">hg19/GRCh37</a> assembly. +The GENCODE V35 annotations were mapped to hg38/GRCh38 and then back-mapped +to the hg19/GRCh37 assembly. The gene set contains the following +tracks:</p> +<ul> + <li>Basic - a subset of the <em>Comprehensive set</em>.</li> + <li>Comprehensive - all GENCODE coding and non-coding transcript annotations, including + polymorphic pseudogenes. This includes both manual and automatic annotations.</li> + <li>Pseudogenes - all annotations except polymorphic pseudogenes.</li></ul> +<p> +Details on each release can be found on the <a target="_blank" +href="https://www.gencodegenes.org/">GENCODE site</a>. This includes <a target="_blank" +href="https://www.gencodegenes.org/human/stats.html">statistics on each release</a>. +<p>We would like to thank the <a target="_blank" +href="https://www.gencodegenes.org/pages/gencode.html">GENCODE project</a> for providing these +annotations. We would also like to thank Mark Diekhans and Lou Nassar for the development and +release of this track.</p> + <a name="120920"></a> <h2>Dec. 9, 2020 New Genome Browser: Hawaiian monk seal, neoSch1 (<em>Neomonachus schauinslandi</em>)</h2> <p> A genome browser is now available for the Hawaiian monk seal (<em>Neomonachus schauinslandi</em>) assembly released in Jun. 2017 by the <a href="https://www.hopkinsmedicine.org/profiles/results/directory/profile/5985613/alan-scott" target="_blank">Johns Hopkins University</a> (ASM220157v1). <h3>About the assembly:</h3> <ul> <li><b>UCSC Genome Browser assembly ID:</b> <a href="../../cgi-bin/hgGateway?db=neoSch1" target="_blank">neoSch1</a></li> <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.jhu.edu/"> Johns Hopkins University</a></li> <li><b>Assembly date:</b> Jun. 2017</li> <li><B>Accession ID:</B> GCF_002201575.1</li>