b57f86a73dd4a9a9541f95fc78cdb7249203b1c2 lrnassar Wed Dec 23 12:06:55 2020 -0800 Removing old newsArch image, and fixing image description refs #26330 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 0dadaf9..8102535 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -55,32 +55,32 @@ <a name="122320"></a> <h2>Dec. 23, 2020 New ClinVar Interpretations track for human (hg19/hg38)</h2> <p> We are pleased to release a new track, <b>ClinVar Interpretations</b>, for the hg19/GRCh37 and hg38/GRCh38 human assemblies. This track can be found as part of the <a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&c=chr10&g=clinvar">ClinVar Composite</a>. It is the first track to use our bead graph display, which is a variation of our existing <a target="_blank" href="#062019">lollipop display</a>.</p> <p> The <b>ClinVar Interpretations track</b> displays the genomic positions of individual variant submissions and interpretations of the clinical significance, as well as their relationship to disease in the ClinVar database. As seen on the image below, the variants are classified into six categories each on a separate horizontal line:</p> <p class="text-center"> - <img class='text-center' src="../images/clinVarInt.png" width='100%' -alt="ClinVar Interpretations track with Franklin display"> + <img class='text-center' src="../images/clinVarInterp.png" width='100%' +alt="ClinVar Interpretations track with bead graph display."> </p> <ul> <li><font color="d20000"><b>P</b> - Pathogenic</font></li> <li><font color="d20000"><b>LP</b> - Likely Pathogenic</font></li> <li><font color="000088"><b>VUS</b> - Variant of Unknown Significance</font></li> <li><font color="#00d200"><b>LB</b> - Likely Benign</font></li> <li><font color="#00d200"><b>B</b> - Benign</font></li> <li><font color="#888"><b>OTH</b> - Others</li></font></ul> <p> The size of the bead on the line represents the number of submissions at that genomic position. The color of the beads aids to distinguish the categories further. Hovering on the track items shows the genomic variations which start at that position and the number of individual submissions with that classification. Additional information on the variants