8f6ed988e6b529bea3c89bd51a04055956a91327 markd Sun Dec 20 13:38:03 2020 -0800 import of all gencode V35 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 5096aa3..4bd127d 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -23,32 +23,32 @@ SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE # # - ensemblPrevVersion is use to get chrom name mappings for pre-release, # as this doesn't change between release. ## -#db = hg38 -db = hg19 +db = hg38 +#db = hg19 #db = mm10 #preRelease = no preRelease = yes ifeq (${db},mm10) grcRefAssembly = GRCm38 ver = M25 prevVer = M24 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 100_38 ensemblPrevVer = 99_38 ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer} else ifeq (${db},hg38) grcRefAssembly = GRCh38