f695b16331ac22d8925e99a05aecd7ce563e0a08
markd
  Mon Dec 21 21:29:40 2020 -0800
import gencodeV36

diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner
index 08f1133..eb147d7 100644
--- src/hg/makeDb/schema/all.joiner
+++ src/hg/makeDb/schema/all.joiner
@@ -2896,31 +2896,125 @@
     hg38.wgEncodeGencodeAnnotationRemarkV35.transcriptId dupeOk
     hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.10
 
 identifier wgEncodeGencodeEntrezGeneV35
 "Link together Gencode UniProt Support table with Attributes table"
     hg38.wgEncodeGencodeEntrezGeneV35.transcriptId dupeOk
     hg38.wgEncodeGencodeEntrezGeneV35.transcriptId minCheck=0.35
 
 identifier wgEncodeGencodeExonSupportV35
 "Link together Gencode Exon Support table with Attributes table"
     hg38.wgEncodeGencodeExonSupportV35.transcriptId dupeOk
     hg38.wgEncodeGencodeAttrsV35.transcriptId minCheck=0.90
 
 # end Gencode V35
 
+# begin Gencode V36
 
+# gencode genePred tables with no associations
+# wgEncodeGencodePolyaV36
+# wgEncodeGencode2wayConsPseudoV36
+
+# gencode genePred tables with joining through wgEncodeGencodeAttrsV36
+identifier wgEncodeGencodeBasicAttrsV36
+"Link together Gencode Basic Table with Attributes table"
+    hg38.wgEncodeGencodeAttrsV36.transcriptId
+    hg38.wgEncodeGencodeBasicV36.name
+
+identifier wgEncodeGencodeCompAttrsV36
+"Link together Gencode Comprehensive Table with Attributes table"
+    hg38.wgEncodeGencodeAttrsV36.transcriptId
+    hg38.wgEncodeGencodeCompV36.name
+
+identifier wgEncodeGencodePseudoGeneAttrsV36
+"Link together Gencode PseudoGene Table with Attributes table"
+    hg38.wgEncodeGencodeAttrsV36.transcriptId
+    hg38.wgEncodeGencodePseudoGeneV36.name
+
+# gencode association tables (joined through wgEncodeGencodeAttrsV36)
+identifier wgEncodeGencodeGeneSourceV36
+"Link together Gencode Gene Source table with Attributes table"
+    hg38.wgEncodeGencodeGeneSourceV36.geneId
+    hg38.wgEncodeGencodeAttrsV36.geneId
+
+identifier wgEncodeGencodeGeneSymbolV36
+"Link together Gencode gene symbol table with Attributes table"
+    hg38.wgEncodeGencodeGeneSymbolV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.20
+
+identifier wgEncodeGencodePdbV36
+"Link together Gencode Pdb table with Attributes table"
+    hg38.wgEncodeGencodePdbV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.015
+
+identifier wgEncodeGencodePubMedV36
+"Link together Gencode Pubmed table with Attributes table"
+    hg38.wgEncodeGencodePubMedV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeAttrsV36.transcriptId  minCheck=0.63
+
+identifier wgEncodeGencodeRefSeqV36
+"Link together Gencode RefSeq table with Attributes table"
+    hg38.wgEncodeGencodeRefSeqV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.05
+
+identifier wgEncodeGencodeRefSeqToRefGeneV36
+"Link together Gencode RefSeq table with refGene track"
+    hg38.wgEncodeGencodeRefSeqV36.rnaAcc dupeOk chopAfter=.
+    hg38.refGene.name minCheck=0.77
+
+identifier wgEncodeGencodeTagV36
+"Link together Gencode Tag table with Attributes table"
+    hg38.wgEncodeGencodeTagV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.36
+    hg38.wgEncodeGencodeRefSeqV36.transcriptId minCheck=0.9
+
+identifier wgEncodeGencodeTranscriptSourceV36
+"Link together Gencode Transcript Source table with Attributes table"
+    hg38.wgEncodeGencodeTranscriptSourceV36.transcriptId
+    hg38.wgEncodeGencodeAttrsV36.transcriptId
+
+identifier wgEncodeGencodeTranscriptSupportV36
+"Link together Gencode Transcript Support table with Attributes table"
+    hg38.wgEncodeGencodeTranscriptSupportV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.08
+
+identifier wgEncodeGencodeTranscriptionSupportLevelV36
+"Link together Gencode Transcription Support Level table with Attributes table"
+    hg38.wgEncodeGencodeTranscriptionSupportLevelV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.30
+
+identifier wgEncodeGencodeUniProtV36
+"Link together Gencode UniProt Support table with Attributes table"
+    hg38.wgEncodeGencodeUniProtV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.35
+
+identifier wgEncodeGencodeAnnotationRemarkV36
+"Link together Gencode Annotation Remark table with Attributes table"
+    hg38.wgEncodeGencodeAnnotationRemarkV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.10
+
+identifier wgEncodeGencodeEntrezGeneV36
+"Link together Gencode UniProt Support table with Attributes table"
+    hg38.wgEncodeGencodeEntrezGeneV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeEntrezGeneV36.transcriptId minCheck=0.35
+
+identifier wgEncodeGencodeExonSupportV36
+"Link together Gencode Exon Support table with Attributes table"
+    hg38.wgEncodeGencodeExonSupportV36.transcriptId dupeOk
+    hg38.wgEncodeGencodeAttrsV36.transcriptId minCheck=0.80
+
+# end Gencode V36
 
 # begin Gencode V24lift37
 
 # gencode genepreds with no associations
 # wgEncodeGencodePolyaV24lift37
 # wgEncodeGencode2wayConsPseudoV24lift37
 
 # gencode genepreds with joining through wgEncodeGencodeAttrsV24lift37
 identifier wgEncodeGencodeBasicAttrsV24lift37
 "Link together Gencode Basic Table with Attributes table"
     hg19.wgEncodeGencodeAttrsV24lift37.transcriptId
     hg19.wgEncodeGencodeBasicV24lift37.name
 
 identifier wgEncodeGencodeCompAttrsV24lift37
 "Link together Gencode Comprehensive Table with Attributes table"