01a64f9d63b8d29bee782ced4e5ce16260089649
markd
  Fri Dec 18 15:37:24 2020 -0800
fix hgTracks bring in uncommon shared library with HAL/HDF5, make CGIs less portable

diff --git src/inc/common.mk src/inc/common.mk
index b7eb576..d19526f 100644
--- src/inc/common.mk
+++ src/inc/common.mk
@@ -56,41 +56,44 @@
 else
   ifneq ($(wildcard /opt/local/lib/libiconv.a),)
        ICONVLIB=/opt/local/lib/libiconv.a
    else
        ICONVLIB=-liconv
   endif
 endif
 
 # autodetect if openssl is installed
 ifeq (${SSLDIR},)
   SSLDIR = /usr/include/openssl
 endif
 
 # autodetect UCSC installation of hal:
 ifeq (${HALDIR},)
-    HALDIR = /hive/groups/browser/hal/build/hal.2020-12-13
+    HALDIR = /hive/groups/browser/hal/build/hal.2020-12-18
     ifneq ($(wildcard ${HALDIR}),)
         ifeq (${USE_HAL},)
           USE_HAL=1
         endif
     endif
 endif
 
 ifeq (${USE_HAL},1)
-    HDF5LIBS=/usr/lib64/libhdf5_cpp.a /usr/lib64/libhdf5.a /usr/lib64/libhdf5_hl.a
-    HALLIBS=${HALDIR}/hal/lib/libHalBlockViz.a ${HALDIR}/hal/lib/libHalMaf.a ${HALDIR}/hal/lib/libHalLiftover.a ${HALDIR}/hal/lib/libHalLod.a ${HALDIR}/hal/lib/libHal.a ${HALDIR}/sonLib/lib/sonLib.a ${HDF5LIBS} -lcurl -lsz -lstdc++
+    # force static libraries to keep programs portable
+    HDF5DIR=/hive/groups/browser/hal/build/hdf5-1.12.0
+    HDF5LIBDIR=${HDF5DIR}/local/lib
+    HDF5LIBS=${HDF5LIBDIR}/libhdf5_cpp.a ${HDF5LIBDIR}/libhdf5.a ${HDF5LIBDIR}/libhdf5_hl.a
+    HALLIBS=${HALDIR}/hal/lib/libHalBlockViz.a ${HALDIR}/hal/lib/libHalMaf.a ${HALDIR}/hal/lib/libHalLiftover.a ${HALDIR}/hal/lib/libHalLod.a ${HALDIR}/hal/lib/libHal.a ${HALDIR}/sonLib/lib/sonLib.a ${HDF5LIBS} -lcurl -lstdc++
     HG_DEFS+=-DUSE_HAL
     HG_INC+=-I${HALDIR}/inc -I${HALDIR}/hal/blockViz/inc
 endif
 # on hgwdev, include HAL by defaults
 ifeq (${IS_HGWDEV},yes)
    L+=${HALLIBS}
 endif
 
 ifeq (${USE_HIC},)
     USE_HIC=1
 endif
 
 ifeq (${USE_HIC},1)
     HG_DEFS+=-DUSE_HIC
 endif