cf1446a79ba6729f0d88f1ccca523d9604d758ca
max
  Tue Dec 15 02:09:54 2020 -0800
fixing up the chromToUcsc test case to use a more realistic vcf.gz file, refs #26672

diff --git src/utils/chromToUcsc/tests/in/hg19.vcf src/utils/chromToUcsc/tests/in/hg19.vcf
deleted file mode 100644
index dde2a8e..0000000
--- src/utils/chromToUcsc/tests/in/hg19.vcf
+++ /dev/null
@@ -1,500 +0,0 @@
-##fileformat=VCFv4.1
-##INFO=<ID=LDAF,Number=1,Type=Float,Description="MLE Allele Frequency Accounting for LD">
-##INFO=<ID=AVGPOST,Number=1,Type=Float,Description="Average posterior probability from MaCH/Thunder">
-##INFO=<ID=RSQ,Number=1,Type=Float,Description="Genotype imputation quality from MaCH/Thunder">
-##INFO=<ID=ERATE,Number=1,Type=Float,Description="Per-marker Mutation rate from MaCH/Thunder">
-##INFO=<ID=THETA,Number=1,Type=Float,Description="Per-marker Transition rate from MaCH/Thunder">
-##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
-##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
-##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
-##INFO=<ID=HOMLEN,Number=.,Type=Integer,Description="Length of base pair identical micro-homology at event breakpoints">
-##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical micro-homology at event breakpoints">
-##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Difference in length between REF and ALT alleles">
-##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
-##INFO=<ID=AC,Number=.,Type=Integer,Description="Alternate Allele Count">
-##INFO=<ID=AN,Number=1,Type=Integer,Description="Total Allele Count">
-##ALT=<ID=DEL,Description="Deletion">
-##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=DS,Number=1,Type=Float,Description="Genotype dosage from MaCH/Thunder">
-##FORMAT=<ID=GL,Number=.,Type=Float,Description="Genotype Likelihoods">
-##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele, ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/technical/reference/ancestral_alignments/README">
-##INFO=<ID=AF,Number=1,Type=Float,Description="Global Allele Frequency based on AC/AN">
-##INFO=<ID=AMR_AF,Number=1,Type=Float,Description="Allele Frequency for samples from AMR based on AC/AN">
-##INFO=<ID=ASN_AF,Number=1,Type=Float,Description="Allele Frequency for samples from ASN based on AC/AN">
-##INFO=<ID=AFR_AF,Number=1,Type=Float,Description="Allele Frequency for samples from AFR based on AC/AN">
-##INFO=<ID=EUR_AF,Number=1,Type=Float,Description="Allele Frequency for samples from EUR based on AC/AN">
-##INFO=<ID=VT,Number=1,Type=String,Description="indicates what type of variant the line represents">
-##INFO=<ID=SNPSOURCE,Number=.,Type=String,Description="indicates if a snp was called when analysing the low coverage or exome alignment data">
-##reference=GRCh37
-#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
-1	10583	rs58108140	G	A	100	PASS	AVGPOST=0.7707;RSQ=0.4319;LDAF=0.2327;ERATE=0.0161;AN=2184;VT=SNP;AA=.;THETA=0.0046;AC=314;SNPSOURCE=LOWCOV;AF=0.14;ASN_AF=0.13;AMR_AF=0.17;AFR_AF=0.04;EUR_AF=0.21
-1	10611	rs189107123	C	G	100	PASS	AN=2184;THETA=0.0077;VT=SNP;AA=.;AC=41;ERATE=0.0048;SNPSOURCE=LOWCOV;AVGPOST=0.9330;LDAF=0.0479;RSQ=0.3475;AF=0.02;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.02
-1	13302	rs180734498	C	T	100	PASS	THETA=0.0048;AN=2184;AC=249;VT=SNP;AA=.;RSQ=0.6281;LDAF=0.1573;SNPSOURCE=LOWCOV;AVGPOST=0.8895;ERATE=0.0058;AF=0.11;ASN_AF=0.02;AMR_AF=0.08;AFR_AF=0.21;EUR_AF=0.14
-1	13327	rs144762171	G	C	100	PASS	AVGPOST=0.9698;AN=2184;VT=SNP;AA=.;RSQ=0.6482;AC=59;SNPSOURCE=LOWCOV;ERATE=0.0012;LDAF=0.0359;THETA=0.0204;AF=0.03;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.04
-1	13957	rs201747181	TC	T	28	PASS	AA=TC;AC=35;AF=0.02;AFR_AF=0.02;AMR_AF=0.02;AN=2184;ASN_AF=0.01;AVGPOST=0.8711;ERATE=0.0065;EUR_AF=0.02;LDAF=0.0788;RSQ=0.2501;THETA=0.0100;VT=INDEL
-1	13980	rs151276478	T	C	100	PASS	AN=2184;AC=45;ERATE=0.0034;THETA=0.0139;RSQ=0.3603;LDAF=0.0525;VT=SNP;AA=.;AVGPOST=0.9221;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.02
-1	30923	rs140337953	G	T	100	PASS	AC=1584;AA=T;AN=2184;RSQ=0.5481;VT=SNP;THETA=0.0162;SNPSOURCE=LOWCOV;ERATE=0.0183;LDAF=0.6576;AVGPOST=0.7335;AF=0.73;ASN_AF=0.89;AMR_AF=0.80;AFR_AF=0.48;EUR_AF=0.73
-1	46402	rs199681827	C	CTGT	31	PASS	AA=.;AC=8;AF=0.0037;AFR_AF=0.01;AN=2184;ASN_AF=0.0017;AVGPOST=0.8325;ERATE=0.0072;LDAF=0.0903;RSQ=0.0960;THETA=0.0121;VT=INDEL
-1	47190	rs200430748	G	GA	192	PASS	AA=G;AC=29;AF=0.01;AFR_AF=0.06;AMR_AF=0.0028;AN=2184;AVGPOST=0.9041;ERATE=0.0041;LDAF=0.0628;RSQ=0.2883;THETA=0.0153;VT=INDEL
-1	51476	rs187298206	T	C	100	PASS	ERATE=0.0021;AA=C;AC=18;AN=2184;VT=SNP;THETA=0.0103;LDAF=0.0157;SNPSOURCE=LOWCOV;AVGPOST=0.9819;RSQ=0.5258;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01
-1	51479	rs116400033	T	A	100	PASS	RSQ=0.7414;AVGPOST=0.9085;AA=T;AN=2184;THETA=0.0131;AC=235;VT=SNP;LDAF=0.1404;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.11;ASN_AF=0.0035;AMR_AF=0.16;AFR_AF=0.03;EUR_AF=0.22
-1	51914	rs190452223	T	G	100	PASS	ERATE=0.0004;AVGPOST=0.9985;THETA=0.0159;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4089;LDAF=0.0012;AF=0.0005;ASN_AF=0.0017
-1	51935	rs181754315	C	T	100	PASS	THETA=0.0126;AA=C;AN=2184;RSQ=0.1888;AVGPOST=0.9972;LDAF=0.0015;VT=SNP;AC=0;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0
-1	51954	rs185832753	G	C	100	PASS	LDAF=0.0021;AA=G;AN=2184;RSQ=0.4692;AVGPOST=0.9975;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0029;ERATE=0.0006;AC=2;AF=0.0009;AMR_AF=0.01
-1	52058	rs62637813	G	C	100	PASS	AA=C;ERATE=0.0057;AN=2184;AVGPOST=0.9264;VT=SNP;RSQ=0.4882;AC=64;SNPSOURCE=LOWCOV;LDAF=0.0620;THETA=0.0069;AF=0.03;ASN_AF=0.0017;AMR_AF=0.04;AFR_AF=0.02;EUR_AF=0.05
-1	52144	rs190291950	T	A	100	PASS	THETA=0.0093;ERATE=0.0013;LDAF=0.0156;AA=T;AN=2184;VT=SNP;RSQ=0.5220;AVGPOST=0.9811;SNPSOURCE=LOWCOV;AC=21;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01
-1	52185	rs201374420	TTAA	T	244	PASS	AA=.;AC=10;AF=0.0046;AFR_AF=0.0020;AMR_AF=0.02;AN=2184;ASN_AF=0.0035;AVGPOST=0.9840;ERATE=0.0037;LDAF=0.0124;RSQ=0.4271;THETA=0.0232;VT=INDEL
-1	52238	rs150021059	T	G	100	PASS	THETA=0.0132;AA=G;AN=2184;RSQ=0.6256;VT=SNP;ERATE=0.0026;AVGPOST=0.8617;SNPSOURCE=LOWCOV;AC=1941;LDAF=0.8423;AF=0.89;ASN_AF=0.99;AMR_AF=0.93;AFR_AF=0.64;EUR_AF=0.95
-1	53234	rs199502715	CAT	C	227	PASS	AA=CAT;AC=10;AF=0.0046;AFR_AF=0.02;AMR_AF=0.0028;AN=2184;AVGPOST=0.9936;ERATE=0.0007;LDAF=0.0074;RSQ=0.6237;THETA=0.0119;VT=INDEL
-1	54353	rs140052487	C	A	100	PASS	THETA=0.0026;AA=C;AN=2184;AC=16;VT=SNP;RSQ=0.5074;SNPSOURCE=LOWCOV;AVGPOST=0.9844;LDAF=0.0146;ERATE=0.0058;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.02;EUR_AF=0.0013
-1	54421	rs146477069	A	G	100	PASS	ERATE=0.0013;AN=2184;AC=220;VT=SNP;RSQ=0.7869;AVGPOST=0.9461;AA=A;THETA=0.0025;SNPSOURCE=LOWCOV;LDAF=0.1190;AF=0.10;ASN_AF=0.25;AMR_AF=0.12;AFR_AF=0.03;EUR_AF=0.02
-1	54490	rs141149254	G	A	100	PASS	ERATE=0.0004;THETA=0.0074;AA=G;AN=2184;VT=SNP;RSQ=0.8366;AVGPOST=0.9646;AC=175;SNPSOURCE=LOWCOV;LDAF=0.0929;AF=0.08;ASN_AF=0.0035;AMR_AF=0.12;AFR_AF=0.03;EUR_AF=0.15
-1	54676	rs2462492	C	T	100	PASS	LDAF=0.1528;RSQ=0.6989;AA=T;AN=2184;AC=267;VT=SNP;AVGPOST=0.8998;SNPSOURCE=LOWCOV;THETA=0.0110;ERATE=0.0037;AF=0.12;ASN_AF=0.02;AMR_AF=0.20;AFR_AF=0.09;EUR_AF=0.18
-1	54753	rs143174675	T	G	100	PASS	AA=T;AN=2184;RSQ=0.6820;AC=65;VT=SNP;THETA=0.0080;ERATE=0.0016;SNPSOURCE=LOWCOV;AVGPOST=0.9697;LDAF=0.0399;AF=0.03;AMR_AF=0.04;AFR_AF=0.07;EUR_AF=0.03
-1	55164	rs3091274	C	A	100	PASS	AN=2184;VT=SNP;ERATE=0.0045;AA=A;THETA=0.0162;SNPSOURCE=LOWCOV;AC=1955;RSQ=0.6373;AVGPOST=0.8686;LDAF=0.8489;AF=0.90;ASN_AF=0.99;AMR_AF=0.94;AFR_AF=0.65;EUR_AF=0.96
-1	55249	rs200769871	C	CTATGG	443	PASS	AA=C;AC=151;AF=0.07;AFR_AF=0.03;AMR_AF=0.08;AN=2184;ASN_AF=0.16;AVGPOST=0.9073;ERATE=0.0063;EUR_AF=0.02;LDAF=0.0968;RSQ=0.5891;THETA=0.0038;VT=INDEL
-1	55299	rs10399749	C	T	100	PASS	RSQ=0.7602;LDAF=0.2954;AN=2184;VT=SNP;ERATE=0.0051;AA=c;AC=554;SNPSOURCE=LOWCOV;AVGPOST=0.8845;THETA=0.0070;AF=0.25;ASN_AF=0.33;AMR_AF=0.21;AFR_AF=0.39;EUR_AF=0.13
-1	55313	rs182462964	A	T	100	PASS	ERATE=0.0004;RSQ=0.6112;AVGPOST=0.9994;AN=2184;VT=SNP;THETA=0.0057;AA=A;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;AFR_AF=0.0020
-1	55326	rs3107975	T	C	100	PASS	AA=C;ERATE=0.0074;AN=2184;THETA=0.0085;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9622;AC=90;RSQ=0.6901;LDAF=0.0562;AF=0.04;ASN_AF=0.07;AMR_AF=0.02;AFR_AF=0.07;EUR_AF=0.01
-1	55330	rs185215913	G	A	100	PASS	ERATE=0.0005;AA=G;AN=2184;VT=SNP;THETA=0.0086;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4701;AF=0.0005;AFR_AF=0.0020
-1	55367	rs190850374	G	A	100	PASS	ERATE=0.0004;THETA=0.0044;AA=G;AN=2184;VT=SNP;LDAF=0.0029;RSQ=0.3860;SNPSOURCE=LOWCOV;AVGPOST=0.9961;AC=2;AF=0.0009;AMR_AF=0.01
-1	55388	rs182711216	C	T	100	PASS	THETA=0.0102;ERATE=0.0005;AA=C;AVGPOST=0.9983;AN=2184;LDAF=0.0010;VT=SNP;RSQ=0.2348;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017
-1	55394	rs2949420	T	A	100	PASS	AC=18;AN=2184;VT=SNP;AA=A;RSQ=0.4995;AVGPOST=0.9784;LDAF=0.0171;SNPSOURCE=LOWCOV;ERATE=0.0012;THETA=0.0063;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02
-1	55416	rs193242050	G	A	100	PASS	AA=G;AN=2184;AVGPOST=0.9944;VT=SNP;LDAF=0.0064;AC=9;THETA=0.0019;RSQ=0.6553;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0041;AFR_AF=0.02
-1	55427	rs183189405	T	C	100	PASS	THETA=0.0054;AA=T;AN=2184;VT=SNP;AVGPOST=0.9969;LDAF=0.0020;SNPSOURCE=LOWCOV;AC=1;RSQ=0.2759;ERATE=0.0007;AF=0.0005;AFR_AF=0.0020
-1	55816	rs187434873	G	A	100	PASS	AN=2184;THETA=0.0119;VT=SNP;AC=10;RSQ=0.4578;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9844;LDAF=0.0108;ERATE=0.0007;AF=0.0046;AMR_AF=0.01;EUR_AF=0.01
-1	55850	rs191890754	C	G	100	PASS	AVGPOST=0.9921;AA=G;AN=2184;VT=SNP;RSQ=0.4083;THETA=0.0045;LDAF=0.0056;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0023;EUR_AF=0.01
-1	55852	rs184233019	G	C	100	PASS	THETA=0.0137;AA=G;AN=2184;RSQ=0.5433;ERATE=0.0009;LDAF=0.0046;VT=SNP;AVGPOST=0.9953;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.01;EUR_AF=0.0013
-1	56644	rs143342222	A	C	100	PASS	AN=2184;AVGPOST=0.9962;LDAF=0.0040;ERATE=0.0024;VT=SNP;AA=A;RSQ=0.5700;AC=5;SNPSOURCE=LOWCOV;THETA=0.0117;AF=0.0023;AFR_AF=0.01
-1	57952	rs189727433	A	C	100	PASS	AA=C;ERATE=0.0085;AN=2184;LDAF=0.7878;VT=SNP;THETA=0.0076;RSQ=0.4712;AC=1902;SNPSOURCE=LOWCOV;AVGPOST=0.7578;AF=0.87;ASN_AF=0.98;AMR_AF=0.91;AFR_AF=0.64;EUR_AF=0.91
-1	58814	rs114420996	G	A	100	PASS	AC=223;THETA=0.0032;AA=G;AN=2184;RSQ=0.9087;LDAF=0.1074;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9777;AF=0.10;ASN_AF=0.03;AMR_AF=0.17;AFR_AF=0.20;EUR_AF=0.06
-1	59040	rs149755937	T	C	100	PASS	AVGPOST=0.9710;AC=115;AA=T;AN=2184;RSQ=0.8248;VT=SNP;ERATE=0.0017;THETA=0.0025;SNPSOURCE=LOWCOV;LDAF=0.0613;AF=0.05;ASN_AF=0.03;AMR_AF=0.15;AFR_AF=0.0041;EUR_AF=0.06
-1	60726	rs192328835	C	A	100	PASS	AVGPOST=0.9092;AN=2184;RSQ=0.5988;ERATE=0.0081;AC=144;VT=SNP;THETA=0.0045;AA=A;SNPSOURCE=LOWCOV;LDAF=0.0959;AF=0.07;ASN_AF=0.05;AMR_AF=0.10;AFR_AF=0.11;EUR_AF=0.03
-1	61442	rs74970982	A	G	100	PASS	LDAF=0.9152;AA=G;AN=2184;VT=SNP;ERATE=0.0026;RSQ=0.4867;AVGPOST=0.9004;SNPSOURCE=LOWCOV;THETA=0.0013;AC=2084;AF=0.95;ASN_AF=1.00;AMR_AF=0.97;AFR_AF=0.84;EUR_AF=0.99
-1	61462	rs56992750	T	A	100	PASS	THETA=0.0023;LDAF=0.0378;RSQ=0.7396;AA=T;AN=2184;AVGPOST=0.9773;VT=SNP;AC=68;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.03;AMR_AF=0.02;AFR_AF=0.13
-1	61743	rs184286948	G	C	100	PASS	AVGPOST=0.9939;LDAF=0.0047;AA=G;AN=2184;VT=SNP;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=4;THETA=0.0016;RSQ=0.4838;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0026
-1	61987	rs76735897	A	G	100	PASS	THETA=0.0015;AN=2184;AC=569;VT=SNP;AA=A;RSQ=0.7192;AVGPOST=0.8533;LDAF=0.2944;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.26;ASN_AF=0.07;AMR_AF=0.31;AFR_AF=0.25;EUR_AF=0.39
-1	61989	rs77573425	G	C	100	PASS	RSQ=0.7254;AVGPOST=0.8584;AA=G;AN=2184;LDAF=0.2849;VT=SNP;AC=555;THETA=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.25;ASN_AF=0.07;AMR_AF=0.31;AFR_AF=0.22;EUR_AF=0.39
-1	61993	rs190553843	C	T	100	PASS	AC=7;RSQ=0.6106;AA=C;THETA=0.0143;AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.9953;SNPSOURCE=LOWCOV;LDAF=0.0050;AF=0.0032;AFR_AF=0.01
-1	62156	rs181864839	C	T	100	PASS	ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9979;LDAF=0.0015;VT=SNP;THETA=0.0094;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4561;AF=0.0005;AFR_AF=0.0020
-1	62157	rs10399597	G	A	100	PASS	AVGPOST=0.9945;AA=G;AN=2184;ERATE=0.0025;VT=SNP;RSQ=0.5217;AC=5;THETA=0.0066;SNPSOURCE=LOWCOV;LDAF=0.0050;AF=0.0023;AFR_AF=0.01
-1	62162	rs140556834	G	A	100	PASS	AA=G;AN=2184;AC=8;LDAF=0.0057;VT=SNP;THETA=0.0018;ERATE=0.0017;RSQ=0.6089;AVGPOST=0.9948;SNPSOURCE=LOWCOV;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013
-1	63276	rs185977555	G	A	100	PASS	RSQ=0.2744;AA=G;AN=2184;AVGPOST=0.9947;VT=SNP;ERATE=0.0010;SNPSOURCE=LOWCOV;AC=1;THETA=0.0010;LDAF=0.0031;AF=0.0005;AFR_AF=0.0020
-1	63297	rs188886746	G	A	100	PASS	ERATE=0.0005;AVGPOST=0.9986;AA=G;AN=2184;VT=SNP;AC=0;SNPSOURCE=LOWCOV;RSQ=0.2459;THETA=0.0024;LDAF=0.0008;AF=0
-1	63671	rs116440577	G	A	100	PASS	AA=G;AN=2184;ERATE=0.0047;LDAF=0.1773;VT=SNP;THETA=0.0072;AC=369;SNPSOURCE=LOWCOV;RSQ=0.8980;AVGPOST=0.9652;AF=0.17;ASN_AF=0.05;AMR_AF=0.22;AFR_AF=0.35;EUR_AF=0.11
-1	63735	rs201888535	CCTA	C	455	PASS	AA=CCTA;AC=829;AF=0.38;AFR_AF=0.13;AMR_AF=0.33;AN=2184;ASN_AF=0.69;AVGPOST=0.7654;ERATE=0.0047;EUR_AF=0.34;LDAF=0.4128;RSQ=0.6424;THETA=0.0062;VT=INDEL
-1	64649	rs181431124	A	C	100	PASS	RSQ=0.6975;AN=2184;VT=SNP;AA=.;ERATE=0.0008;AVGPOST=0.9918;SNPSOURCE=LOWCOV;AC=21;THETA=0.0024;LDAF=0.0114;AF=0.01;AMR_AF=0.01;EUR_AF=0.03
-1	66162	rs62639105	A	T	100	PASS	THETA=0.0026;ERATE=0.0166;LDAF=0.3089;AN=2184;VT=SNP;AA=.;AC=544;SNPSOURCE=LOWCOV;RSQ=0.5681;AVGPOST=0.7777;AF=0.25;ASN_AF=0.07;AMR_AF=0.30;AFR_AF=0.23;EUR_AF=0.38
-1	66176	rs28552463	T	A	100	PASS	AN=2184;RSQ=0.4451;VT=SNP;AA=.;THETA=0.0095;LDAF=0.0631;AC=70;SNPSOURCE=LOWCOV;ERATE=0.0061;AVGPOST=0.9210;AF=0.03;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.0013
-1	66219	rs181028663	A	T	100	PASS	LDAF=0.1137;ERATE=0.0074;AN=2184;VT=SNP;AA=.;AC=68;THETA=0.0059;RSQ=0.2946;AVGPOST=0.8268;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.08;AMR_AF=0.04;AFR_AF=0.01;EUR_AF=0.01
-1	66331	rs186063952	A	C	100	PASS	THETA=0.0126;AVGPOST=0.7656;RSQ=0.1616;AN=2184;LDAF=0.1387;ERATE=0.0093;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=42;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.07
-1	66442	rs192044252	T	A	100	PASS	RSQ=0.1763;AVGPOST=0.7894;AN=2184;THETA=0.0031;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=36;ERATE=0.0107;LDAF=0.1241;AF=0.02;ASN_AF=0.0035;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.01
-1	66457	rs13328655	T	A	100	PASS	ERATE=0.0085;AN=2184;VT=SNP;AA=.;AC=31;AVGPOST=0.8340;LDAF=0.0957;RSQ=0.1836;SNPSOURCE=LOWCOV;THETA=0.0024;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.01
-1	66507	rs12401368	T	A	100	PASS	ERATE=0.0197;AN=2184;VT=SNP;AA=.;THETA=0.0122;SNPSOURCE=LOWCOV;AC=170;RSQ=0.2110;LDAF=0.2457;AVGPOST=0.6536;AF=0.08;ASN_AF=0.07;AMR_AF=0.09;AFR_AF=0.05;EUR_AF=0.09
-1	67179	rs149952626	C	G	100	PASS	AVGPOST=0.9946;AN=2184;VT=SNP;AA=.;THETA=0.0046;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=11;RSQ=0.6333;LDAF=0.0069;AF=0.01;ASN_AF=0.02
-1	67181	rs77662731	A	G	100	PASS	AVGPOST=0.9817;THETA=0.0096;ERATE=0.0013;AN=2184;RSQ=0.8542;AC=104;LDAF=0.0529;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AF=0.05;AMR_AF=0.02;AFR_AF=0.20
-1	69511	rs75062661	A	G	100	PASS	LDAF=0.6051;AC=1424;ERATE=0.0237;AN=2184;RSQ=0.5669;VT=SNP;AA=.;AVGPOST=0.7173;SNPSOURCE=LOWCOV;THETA=0.0052;AF=0.65;ASN_AF=0.87;AMR_AF=0.65;AFR_AF=0.33;EUR_AF=0.70
-1	69534	rs190717287	T	C	100	PASS	AVGPOST=0.9986;LDAF=0.0013;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4002;THETA=0.0016;ERATE=0.0006;AF=0.0005;ASN_AF=0.0017
-1	69536	rs200013390	C	T	100	PASS	AA=.;AC=0;AF=0;AN=2184;AVGPOST=0.9986;ERATE=0.0006;LDAF=0.0008;RSQ=0.0677;SNPSOURCE=EXOME;THETA=0.0087;VT=SNP
-1	72119	rs199639004	G	GTA	158	PASS	AA=.;AC=8;AF=0.0037;AMR_AF=0.0028;AN=2184;ASN_AF=0.01;AVGPOST=0.9589;ERATE=0.0026;EUR_AF=0.0013;LDAF=0.0243;RSQ=0.2268;THETA=0.0016;VT=INDEL
-1	72148	rs182862337	C	T	100	PASS	AN=2184;RSQ=0.2794;THETA=0.0130;VT=SNP;AA=.;LDAF=0.0019;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0007;AF=0.0005;AMR_AF=0.0028
-1	72297	rs200651397	G	GTAT	160	PASS	AA=G;AC=19;AF=0.01;AMR_AF=0.02;AN=2184;ASN_AF=0.01;AVGPOST=0.9383;ERATE=0.0055;EUR_AF=0.01;LDAF=0.0399;RSQ=0.3194;THETA=0.0064;VT=INDEL
-1	73841	rs143773730	C	T	100	PASS	ERATE=0.0303;THETA=0.0044;AN=2184;AVGPOST=0.8178;RSQ=0.5832;VT=SNP;AA=.;SNPSOURCE=LOWCOV;LDAF=0.2588;AC=425;AF=0.19;ASN_AF=0.15;AMR_AF=0.22;AFR_AF=0.17;EUR_AF=0.23
-1	77462	rs188023513	G	A	100	PASS	LDAF=0.1685;AN=2184;AVGPOST=0.8149;VT=SNP;AA=.;RSQ=0.4624;AC=198;THETA=0.0100;SNPSOURCE=LOWCOV;ERATE=0.0222;AF=0.09;ASN_AF=0.11;AMR_AF=0.12;AFR_AF=0.08;EUR_AF=0.07
-1	77470	rs192898053	T	C	100	PASS	LDAF=0.0047;AN=2184;VT=SNP;AA=.;ERATE=0.0011;AVGPOST=0.9918;THETA=0.0025;RSQ=0.1818;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.0020
-1	77874	rs184538873	G	A	100	PASS	THETA=0.0068;LDAF=0.0516;AN=2184;VT=SNP;AA=.;AVGPOST=0.9594;ERATE=0.0011;AC=87;SNPSOURCE=LOWCOV;RSQ=0.6970;AF=0.04;ASN_AF=0.01;AMR_AF=0.12;AFR_AF=0.0041;EUR_AF=0.04
-1	77961	rs78385339	G	A	100	PASS	AVGPOST=0.9114;AN=2184;VT=SNP;AA=.;THETA=0.0072;RSQ=0.6667;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=192;LDAF=0.1180;AF=0.09;ASN_AF=0.20;AMR_AF=0.14;AFR_AF=0.01;EUR_AF=0.03
-1	79033	rs62641298	A	G	100	PASS	AVGPOST=0.7371;THETA=0.0022;LDAF=0.7962;AN=2184;ERATE=0.0054;VT=SNP;AA=.;AC=1961;SNPSOURCE=LOWCOV;RSQ=0.3963;AF=0.90;ASN_AF=0.98;AMR_AF=0.95;AFR_AF=0.65;EUR_AF=0.97
-1	79050	rs62641299	G	T	100	PASS	AC=1871;AN=2184;THETA=0.0031;RSQ=0.3928;VT=SNP;AA=.;AVGPOST=0.6803;SNPSOURCE=LOWCOV;LDAF=0.7318;ERATE=0.0107;AF=0.86;ASN_AF=0.98;AMR_AF=0.93;AFR_AF=0.54;EUR_AF=0.94
-1	79137	rs143777184	A	T	100	PASS	AN=2184;AC=55;ERATE=0.0009;AVGPOST=0.9773;LDAF=0.0324;VT=SNP;AA=.;THETA=0.0091;SNPSOURCE=LOWCOV;RSQ=0.7309;AF=0.03;AMR_AF=0.01;AFR_AF=0.10
-1	79417	rs184768190	C	T	100	PASS	ERATE=0.0005;THETA=0.0166;AN=2184;RSQ=0.5026;AVGPOST=0.9975;VT=SNP;AA=.;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0035
-1	79772	rs147215883	C	G	100	PASS	LDAF=0.1066;AN=2184;THETA=0.0138;RSQ=0.7199;VT=SNP;AA=.;AVGPOST=0.9271;AC=176;ERATE=0.0011;SNPSOURCE=LOWCOV;AF=0.08;ASN_AF=0.07;AMR_AF=0.06;AFR_AF=0.10;EUR_AF=0.09
-1	79872	rs189224661	T	G	100	PASS	THETA=0.0054;AN=2184;LDAF=0.0057;VT=SNP;AA=.;ERATE=0.0017;AC=9;AVGPOST=0.9956;SNPSOURCE=LOWCOV;RSQ=0.6548;AF=0.0041;AFR_AF=0.02
-1	80454	rs144226842	G	C	100	PASS	RSQ=0.6549;LDAF=0.0035;AN=2184;AVGPOST=0.9975;VT=SNP;AA=.;AC=5;SNPSOURCE=LOWCOV;THETA=0.0110;ERATE=0.0015;AF=0.0023;ASN_AF=0.01
-1	81949	rs181567186	T	C	100	PASS	AN=2184;ERATE=0.0009;VT=SNP;AA=.;AVGPOST=0.9948;LDAF=0.0030;SNPSOURCE=LOWCOV;AC=1;THETA=0.0052;RSQ=0.2129;AF=0.0005;ASN_AF=0.0017
-1	82163	rs139113303	G	A	100	PASS	AN=2184;LDAF=0.0375;ERATE=0.0009;VT=SNP;AA=.;RSQ=0.7842;AC=66;THETA=0.0053;SNPSOURCE=LOWCOV;AVGPOST=0.9761;AF=0.03;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.0020;EUR_AF=0.08
-1	82249	rs1851945	A	G	100	PASS	THETA=0.0137;LDAF=0.0712;AVGPOST=0.9150;AN=2184;VT=SNP;AA=.;RSQ=0.4689;AC=75;ERATE=0.0116;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.03;AMR_AF=0.04;AFR_AF=0.02;EUR_AF=0.04
-1	82609	rs149189449	C	G	100	PASS	ERATE=0.0005;AN=2184;LDAF=0.0364;VT=SNP;AA=.;AC=68;AVGPOST=0.9822;RSQ=0.8408;SNPSOURCE=LOWCOV;THETA=0.0024;AF=0.03;AMR_AF=0.02;AFR_AF=0.0020;EUR_AF=0.08
-1	82676	rs185237834	T	G	100	PASS	LDAF=0.1144;AN=2184;AVGPOST=0.9264;VT=SNP;AA=.;RSQ=0.7176;AC=198;THETA=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0056;AF=0.09;ASN_AF=0.07;AMR_AF=0.08;AFR_AF=0.12;EUR_AF=0.10
-1	82734	rs4030331	T	C	100	PASS	AN=2184;THETA=0.0008;VT=SNP;AA=.;ERATE=0.0158;RSQ=0.6316;AVGPOST=0.8280;LDAF=0.2433;SNPSOURCE=LOWCOV;AC=435;AF=0.20;ASN_AF=0.15;AMR_AF=0.28;AFR_AF=0.24;EUR_AF=0.17
-1	82957	rs189774606	C	T	100	PASS	RSQ=0.5163;AN=2184;VT=SNP;AA=.;LDAF=0.0072;THETA=0.0028;AC=9;AVGPOST=0.9918;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01
-1	83084	rs181193408	T	A	100	PASS	AN=2184;AVGPOST=0.8261;VT=SNP;AA=.;RSQ=0.5750;AC=1914;LDAF=0.8278;SNPSOURCE=LOWCOV;ERATE=0.0061;THETA=0.0064;AF=0.88;ASN_AF=0.99;AMR_AF=0.92;AFR_AF=0.58;EUR_AF=0.96
-1	83088	rs186081601	G	C	100	PASS	ERATE=0.0013;AN=2184;LDAF=0.0043;VT=SNP;AA=.;AVGPOST=0.9922;RSQ=0.1618;THETA=0.0019;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.0020
-1	83771	rs189906733	T	G	100	PASS	RSQ=0.6473;AN=2184;AVGPOST=0.9871;VT=SNP;AA=.;AC=24;ERATE=0.0011;SNPSOURCE=LOWCOV;THETA=0.0043;LDAF=0.0158;AF=0.01;AMR_AF=0.01;AFR_AF=0.04;EUR_AF=0.0013
-1	83977	rs180759811	A	G	100	PASS	AN=2184;ERATE=0.0009;VT=SNP;AA=.;THETA=0.0059;LDAF=0.0038;RSQ=0.2074;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9932;AF=0.0005;AFR_AF=0.0020
-1	84002	rs28850140	G	A	100	PASS	THETA=0.0050;ERATE=0.0211;AN=2184;AC=236;VT=SNP;AA=.;AVGPOST=0.8144;LDAF=0.1921;SNPSOURCE=LOWCOV;RSQ=0.4810;AF=0.11;ASN_AF=0.12;AMR_AF=0.15;AFR_AF=0.07;EUR_AF=0.11
-1	84005	rs202079949	AG	A	78	PASS	AA=.;AC=52;AF=0.02;AFR_AF=0.02;AMR_AF=0.03;AN=2184;ASN_AF=0.01;AVGPOST=0.9360;ERATE=0.0049;EUR_AF=0.04;LDAF=0.0514;RSQ=0.4690;THETA=0.0005;VT=INDEL
-1	84010	rs186443818	G	A	100	PASS	AVGPOST=0.9169;AN=2184;VT=SNP;AA=.;AC=97;THETA=0.0087;LDAF=0.0789;SNPSOURCE=LOWCOV;ERATE=0.0061;RSQ=0.5318;AF=0.04;ASN_AF=0.03;AMR_AF=0.05;AFR_AF=0.03;EUR_AF=0.06
-1	84079	rs190867312	T	C	100	PASS	ERATE=0.0021;AN=2184;AC=6;VT=SNP;AA=.;LDAF=0.0049;AVGPOST=0.9956;RSQ=0.5906;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01
-1	84139	rs183605470	A	T	100	PASS	THETA=0.0023;AC=28;AN=2184;RSQ=0.6469;VT=SNP;AA=.;LDAF=0.0180;SNPSOURCE=LOWCOV;AVGPOST=0.9835;ERATE=0.0006;AF=0.01;ASN_AF=0.0017;AMR_AF=0.07;AFR_AF=0.0041
-1	84156	rs188652299	A	C	100	PASS	THETA=0.0009;AVGPOST=0.9936;ERATE=0.0014;RSQ=0.3359;AN=2184;VT=SNP;AA=.;LDAF=0.0044;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041
-1	84244	rs191297051	A	C	100	PASS	LDAF=0.1204;AN=2184;VT=SNP;AA=.;AVGPOST=0.9398;RSQ=0.7828;THETA=0.0025;ERATE=0.0018;SNPSOURCE=LOWCOV;AC=222;AF=0.10;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.14;EUR_AF=0.11
-1	84295	rs183209871	G	A	100	PASS	LDAF=0.0067;AVGPOST=0.9946;AN=2184;THETA=0.0038;VT=SNP;AA=.;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.6599;AF=0.0041;AMR_AF=0.01;EUR_AF=0.01
-1	84346	rs187855973	T	C	100	PASS	THETA=0.0044;AN=2184;AVGPOST=0.9981;VT=SNP;AA=.;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0007;RSQ=0.3659;AF=0.0005;EUR_AF=0.0013
-1	84453	rs191379015	C	G	100	PASS	LDAF=0.0021;RSQ=0.2866;AN=2184;VT=SNP;AA=.;THETA=0.0018;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9968;AF=0.0005;AMR_AF=0.0028
-1	84705	rs183470350	T	G	100	PASS	LDAF=0.0033;AVGPOST=0.9943;AN=2184;VT=SNP;AA=.;THETA=0.0030;RSQ=0.2658;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013
-1	85063	rs187802690	T	C	100	PASS	THETA=0.0093;AN=2184;VT=SNP;AA=.;ERATE=0.0051;LDAF=0.0255;RSQ=0.6868;AVGPOST=0.9806;AC=38;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.02
-1	85597	rs192472955	A	C	100	PASS	AC=145;AVGPOST=0.9322;AN=2184;LDAF=0.0880;VT=SNP;AA=.;RSQ=0.6993;SNPSOURCE=LOWCOV;THETA=0.0020;ERATE=0.0022;AF=0.07;AMR_AF=0.07;AFR_AF=0.11;EUR_AF=0.09
-1	85622	rs185273034	A	T	100	PASS	ERATE=0.0005;AVGPOST=0.9963;AN=2184;RSQ=0.5194;VT=SNP;AA=.;THETA=0.0174;LDAF=0.0034;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01
-1	85892	rs147185795	A	G	100	PASS	AVGPOST=0.9936;RSQ=0.7759;AN=2184;VT=SNP;AA=.;LDAF=0.0122;SNPSOURCE=LOWCOV;AC=21;THETA=0.0116;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04
-1	86000	rs140628094	A	C	100	PASS	AN=2184;LDAF=0.0062;VT=SNP;AA=.;AC=10;THETA=0.0018;ERATE=0.0008;RSQ=0.7700;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AF=0.0046;AFR_AF=0.02
-1	86018	rs142878000	C	G	100	PASS	ERATE=0.0036;RSQ=0.7867;AVGPOST=0.9429;AN=2184;AC=213;LDAF=0.1166;VT=SNP;AA=.;THETA=0.0030;SNPSOURCE=LOWCOV;AF=0.10;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.12;EUR_AF=0.11
-1	86028	rs114608975	T	C	100	PASS	ERATE=0.0005;AC=73;AN=2184;RSQ=0.8713;VT=SNP;AA=.;THETA=0.0108;SNPSOURCE=LOWCOV;AVGPOST=0.9841;LDAF=0.0388;AF=0.03;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.08
-1	86064	rs190167736	G	A	100	PASS	ERATE=0.0004;AN=2184;VT=SNP;AA=.;THETA=0.0081;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5628;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AFR_AF=0.0020
-1	86065	rs116504101	G	C	100	PASS	ERATE=0.0005;LDAF=0.0398;AN=2184;AVGPOST=0.9846;VT=SNP;AA=.;AC=76;THETA=0.0057;RSQ=0.8725;SNPSOURCE=LOWCOV;AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.09
-1	86282	rs192830046	T	G	100	PASS	LDAF=0.0036;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0012;RSQ=0.2764;AVGPOST=0.9941;AC=2;THETA=0.0034;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013
-1	86303	rs2949417	G	T	100	PASS	THETA=0.0021;RSQ=0.8008;LDAF=0.1194;AN=2184;AC=214;VT=SNP;AA=.;AVGPOST=0.9465;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.10;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.12;EUR_AF=0.11
-1	86331	rs115209712	A	G	100	PASS	THETA=0.0047;AN=2184;VT=SNP;AA=.;AC=216;LDAF=0.1195;RSQ=0.8119;ERATE=0.0008;AVGPOST=0.9495;SNPSOURCE=LOWCOV;AF=0.10;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.12;EUR_AF=0.11
-1	86982	rs184970101	G	A	100	PASS	THETA=0.0050;AN=2184;AVGPOST=0.9979;LDAF=0.0015;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;RSQ=0.3541;AF=0.0005;AFR_AF=0.0020
-1	87021	rs188486692	T	C	100	PASS	AN=2184;RSQ=0.4348;VT=SNP;AA=.;THETA=0.0112;AVGPOST=0.9687;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=19;LDAF=0.0221;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02
-1	87114	rs200095900	CT	C	192	PASS	AA=.;AC=8;AF=0.0037;AFR_AF=0.02;AN=2184;AVGPOST=0.9976;ERATE=0.0010;LDAF=0.0042;RSQ=0.7479;THETA=0.0149;VT=INDEL
-1	87190	rs1524602	G	A	100	PASS	AN=2184;LDAF=0.2822;VT=SNP;AA=.;RSQ=0.7549;THETA=0.0148;AC=540;SNPSOURCE=LOWCOV;ERATE=0.0096;AVGPOST=0.8739;AF=0.25;ASN_AF=0.29;AMR_AF=0.35;AFR_AF=0.38;EUR_AF=0.08
-1	87360	rs180907504	C	T	100	PASS	THETA=0.0014;AN=2184;ERATE=0.0025;RSQ=0.3869;VT=SNP;AA=.;AC=14;LDAF=0.0170;SNPSOURCE=LOWCOV;AVGPOST=0.9768;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;AFR_AF=0.01
-1	87409	rs139490478	C	T	100	PASS	AN=2184;AC=80;RSQ=0.8364;AVGPOST=0.9797;THETA=0.0075;VT=SNP;AA=.;ERATE=0.0011;SNPSOURCE=LOWCOV;LDAF=0.0438;AF=0.04;ASN_AF=0.0017;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.09
-1	87590	rs185279164	G	A	100	PASS	THETA=0.0068;ERATE=0.0005;AN=2184;VT=SNP;AA=.;LDAF=0.0026;RSQ=0.6866;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9982;AF=0.0018;AFR_AF=0.01
-1	87647	rs146836579	T	C	100	PASS	AN=2184;AC=111;THETA=0.0041;VT=SNP;AA=.;LDAF=0.0558;AVGPOST=0.9811;SNPSOURCE=LOWCOV;ERATE=0.0015;RSQ=0.8636;AF=0.05;AMR_AF=0.03;AFR_AF=0.20
-1	87755	rs140735660	G	A	100	PASS	ERATE=0.0027;RSQ=0.5060;AN=2184;AC=16;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AVGPOST=0.9847;LDAF=0.0138;THETA=0.0069;AF=0.01;AFR_AF=0.03
-1	87970	rs189643077	T	C	100	PASS	ERATE=0.0005;AN=2184;RSQ=0.5846;VT=SNP;AA=.;AVGPOST=0.9976;THETA=0.0053;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01
-1	87978	rs182297743	G	A	100	PASS	AVGPOST=0.9963;THETA=0.0074;AN=2184;VT=SNP;AA=.;LDAF=0.0023;RSQ=0.2883;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;AMR_AF=0.0028
-1	88136	rs59529791	G	A	100	PASS	RSQ=0.8406;AN=2184;VT=SNP;AA=.;ERATE=0.0010;THETA=0.0059;AVGPOST=0.9778;SNPSOURCE=LOWCOV;AC=106;LDAF=0.0548;AF=0.05;AMR_AF=0.03;AFR_AF=0.20
-1	88169	rs940550	C	T	100	PASS	RSQ=0.7811;AN=2184;VT=SNP;AA=.;THETA=0.0055;LDAF=0.2576;ERATE=0.0018;SNPSOURCE=LOWCOV;AC=506;AVGPOST=0.8932;AF=0.23;ASN_AF=0.29;AMR_AF=0.33;AFR_AF=0.33;EUR_AF=0.08
-1	88172	rs940551	G	A	100	PASS	RSQ=0.7703;AVGPOST=0.9669;LDAF=0.0483;AN=2184;ERATE=0.0009;VT=SNP;AA=.;THETA=0.0027;SNPSOURCE=LOWCOV;AC=86;AF=0.04;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.09
-1	88177	rs143215837	G	C	100	PASS	ERATE=0.0004;AN=2184;LDAF=0.0456;VT=SNP;AA=.;AVGPOST=0.9686;AC=82;THETA=0.0089;SNPSOURCE=LOWCOV;RSQ=0.7787;AF=0.04;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.09
-1	88188	rs148331237	C	A	100	PASS	THETA=0.0039;AN=2184;VT=SNP;AA=.;AC=9;LDAF=0.0085;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.5212;AVGPOST=0.9910;AF=0.0041;AMR_AF=0.0028;EUR_AF=0.01
-1	88236	rs186918018	C	T	100	PASS	AVGPOST=0.9904;AN=2184;ERATE=0.0031;RSQ=0.5511;VT=SNP;AA=.;THETA=0.0087;LDAF=0.0097;SNPSOURCE=LOWCOV;AC=11;AF=0.01;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.0026
-1	88250	rs191950833	T	A	100	PASS	LDAF=0.0013;AN=2184;RSQ=0.1387;VT=SNP;AA=.;AC=0;THETA=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9974;AF=0
-1	88316	rs113759966	G	A	100	PASS	LDAF=0.0531;AN=2184;VT=SNP;AA=.;THETA=0.0071;RSQ=0.7791;AVGPOST=0.9644;ERATE=0.0008;AC=87;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.0017;AMR_AF=0.04;AFR_AF=0.01;EUR_AF=0.09
-1	88324	rs183326616	A	G	100	PASS	ERATE=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;AA=.;RSQ=0.7073;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0092;AF=0.0005;AFR_AF=0.0020
-1	88338	rs55700207	G	A	100	PASS	THETA=0.0035;RSQ=0.7967;AN=2184;ERATE=0.0034;LDAF=0.1019;VT=SNP;AA=.;AC=186;SNPSOURCE=LOWCOV;AVGPOST=0.9507;AF=0.09;ASN_AF=0.03;AMR_AF=0.15;AFR_AF=0.14;EUR_AF=0.05
-1	88370	rs185487977	G	A	100	PASS	AVGPOST=0.9957;LDAF=0.0035;AN=2184;ERATE=0.0009;RSQ=0.4507;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=4;THETA=0.0043;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.0040
-1	88376	rs189954431	T	G	100	PASS	RSQ=0.6404;AVGPOST=0.9994;AN=2184;VT=SNP;AA=.;THETA=0.0057;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.0020
-1	88388	rs182344336	C	T	100	PASS	THETA=0.0048;ERATE=0.0005;RSQ=0.3843;AVGPOST=0.9977;LDAF=0.0016;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017
-1	88429	rs146027550	T	C	100	PASS	LDAF=0.0083;AN=2184;AC=13;RSQ=0.6097;VT=SNP;AA=.;ERATE=0.0010;AVGPOST=0.9922;SNPSOURCE=LOWCOV;THETA=0.0069;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.0013
-1	88710	rs186575039	C	G	100	PASS	ERATE=0.0005;AC=73;THETA=0.0022;AN=2184;VT=SNP;AA=.;AVGPOST=0.9774;LDAF=0.0389;SNPSOURCE=LOWCOV;RSQ=0.8058;AF=0.03;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.08
-1	89165	rs192631277	A	C	100	PASS	RSQ=0.2647;AN=2184;ERATE=0.0009;VT=SNP;AA=.;AVGPOST=0.9969;LDAF=0.0020;SNPSOURCE=LOWCOV;AC=1;THETA=0.0043;AF=0.0005;ASN_AF=0.0017
-1	89744	rs184101761	A	G	100	PASS	THETA=0.0068;ERATE=0.0004;AVGPOST=0.9985;LDAF=0.0016;AN=2184;RSQ=0.5853;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041
-1	89794	rs188661839	T	C	100	PASS	AN=2184;THETA=0.0130;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;RSQ=0.3812;AVGPOST=0.9984;LDAF=0.0012;AF=0.0005;AFR_AF=0.0020
-1	89946	rs138808727	A	T	100	PASS	RSQ=0.7414;LDAF=0.1417;AN=2184;ERATE=0.0009;AC=236;VT=SNP;AA=.;THETA=0.0100;AVGPOST=0.9001;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.0035;AMR_AF=0.16;AFR_AF=0.02;EUR_AF=0.22
-1	91190	rs143856811	G	A	100	PASS	AN=2184;AC=77;ERATE=0.0009;VT=SNP;AA=.;LDAF=0.0447;SNPSOURCE=LOWCOV;RSQ=0.7517;THETA=0.0113;AVGPOST=0.9690;AF=0.04;ASN_AF=0.0017;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.08
-1	91228	rs139873689	A	G	100	PASS	AN=2184;AVGPOST=0.9924;AC=8;RSQ=0.5097;VT=SNP;AA=.;ERATE=0.0010;THETA=0.0012;SNPSOURCE=LOWCOV;LDAF=0.0070;AF=0.0037;AFR_AF=0.02
-1	91536	rs77418980	G	T	100	PASS	AC=695;AN=2184;ERATE=0.0025;AVGPOST=0.7792;VT=SNP;AA=.;THETA=0.0018;LDAF=0.3255;RSQ=0.6634;SNPSOURCE=LOWCOV;AF=0.32;ASN_AF=0.34;AMR_AF=0.30;AFR_AF=0.04;EUR_AF=0.50
-1	91581	rs151118460	G	A	100	PASS	AVGPOST=0.7763;THETA=0.0078;AN=2184;VT=SNP;AA=.;AC=716;ERATE=0.0035;LDAF=0.3353;RSQ=0.6618;SNPSOURCE=LOWCOV;AF=0.33;ASN_AF=0.37;AMR_AF=0.30;AFR_AF=0.04;EUR_AF=0.50
-1	91605	rs141083882	C	T	100	PASS	AC=105;LDAF=0.0597;AN=2184;RSQ=0.7792;VT=SNP;AA=.;ERATE=0.0010;AVGPOST=0.9660;SNPSOURCE=LOWCOV;THETA=0.0070;AF=0.05;AMR_AF=0.02;AFR_AF=0.20
-1	92633	rs149776517	C	T	100	PASS	THETA=0.0054;AN=2184;VT=SNP;AA=.;AC=44;AVGPOST=0.9592;ERATE=0.0008;LDAF=0.0366;SNPSOURCE=LOWCOV;RSQ=0.5870;AF=0.02;AMR_AF=0.02;EUR_AF=0.05
-1	92858	rs147061536	G	T	100	PASS	AC=248;THETA=0.0212;RSQ=0.7567;AN=2184;ERATE=0.0046;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AVGPOST=0.9072;LDAF=0.1433;AF=0.11;ASN_AF=0.01;AMR_AF=0.15;AFR_AF=0.05;EUR_AF=0.22
-1	92875	rs193157612	T	C	100	PASS	THETA=0.0048;AVGPOST=0.9957;AN=2184;LDAF=0.0040;ERATE=0.0009;VT=SNP;AA=.;RSQ=0.4901;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;EUR_AF=0.01
-1	94421	rs200856736	TC	T	90	PASS	AA=TC;AC=253;AF=0.12;AFR_AF=0.01;AMR_AF=0.20;AN=2184;ASN_AF=0.26;AVGPOST=0.7183;ERATE=0.0117;EUR_AF=0.03;LDAF=0.2244;RSQ=0.3175;THETA=0.0159;VT=INDEL
-1	94986	rs185004859	C	T	100	PASS	ERATE=0.0166;AN=2184;AC=100;THETA=0.0227;VT=SNP;AA=.;LDAF=0.0872;AVGPOST=0.9040;SNPSOURCE=LOWCOV;RSQ=0.4650;AF=0.05;ASN_AF=0.03;AMR_AF=0.04;AFR_AF=0.07;EUR_AF=0.04
-1	94991	rs188832636	G	A	100	PASS	THETA=0.0048;LDAF=0.0041;AN=2184;AVGPOST=0.9944;ERATE=0.0009;VT=SNP;AA=.;SNPSOURCE=LOWCOV;RSQ=0.4157;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026
-1	98583	rs141344361	T	A	100	PASS	AVGPOST=0.9463;AC=248;THETA=0.0099;AN=2184;VT=SNP;AA=.;RSQ=0.8090;LDAF=0.1336;ERATE=0.0008;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.30;AMR_AF=0.16;AFR_AF=0.01;EUR_AF=0.02
-1	98929	rs12184306	A	G	100	PASS	RSQ=0.6226;AVGPOST=0.8784;AN=2184;VT=SNP;AA=.;ERATE=0.0045;LDAF=0.1723;SNPSOURCE=LOWCOV;AC=264;THETA=0.0070;AF=0.12;ASN_AF=0.16;AMR_AF=0.08;AFR_AF=0.16;EUR_AF=0.09
-1	98946	rs191775802	C	G	100	PASS	AVGPOST=0.9945;ERATE=0.0013;AN=2184;LDAF=0.0046;VT=SNP;AA=.;RSQ=0.4807;SNPSOURCE=LOWCOV;AC=4;THETA=0.0097;AF=0.0018;AFR_AF=0.01
-1	98974	rs12184307	A	G	100	PASS	AVGPOST=0.8921;AN=2184;AC=224;THETA=0.0130;VT=SNP;AA=.;LDAF=0.1405;RSQ=0.6149;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.10;ASN_AF=0.14;AMR_AF=0.07;AFR_AF=0.14;EUR_AF=0.06
-1	99671	rs146209971	A	T	100	PASS	THETA=0.0199;AN=2184;AC=13;RSQ=0.4401;VT=SNP;AA=.;ERATE=0.0010;AVGPOST=0.9802;SNPSOURCE=LOWCOV;LDAF=0.0158;AF=0.01;AMR_AF=0.02;AFR_AF=0.0020;EUR_AF=0.01
-1	99687	rs139153227	C	T	100	PASS	THETA=0.0211;LDAF=0.0470;AN=2184;VT=SNP;AA=.;ERATE=0.0010;RSQ=0.6276;AVGPOST=0.9548;AC=64;SNPSOURCE=LOWCOV;AF=0.03;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.07
-1	99719	rs183898652	C	T	100	PASS	AN=2184;RSQ=0.5856;VT=SNP;AA=.;AC=10;ERATE=0.0018;SNPSOURCE=LOWCOV;LDAF=0.0076;AVGPOST=0.9925;THETA=0.0251;AF=0.0046;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0013
-1	100676	rs188226172	A	T	100	PASS	THETA=0.0212;LDAF=0.0047;AN=2184;VT=SNP;AA=.;RSQ=0.2646;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=2;AVGPOST=0.9925;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.0020
-1	103905	rs142403309	A	G	100	PASS	AN=2184;THETA=0.0131;ERATE=0.0025;AVGPOST=0.8782;AC=220;VT=SNP;AA=.;LDAF=0.1434;SNPSOURCE=LOWCOV;RSQ=0.5994;AF=0.10;ASN_AF=0.10;AMR_AF=0.14;AFR_AF=0.15;EUR_AF=0.05
-1	106544	rs180741296	C	G	100	PASS	AC=205;AVGPOST=0.5776;AN=2184;VT=SNP;AA=.;LDAF=0.3120;SNPSOURCE=LOWCOV;ERATE=0.0061;THETA=0.0372;RSQ=0.1442;AF=0.09;ASN_AF=0.11;AMR_AF=0.13;AFR_AF=0.11;EUR_AF=0.05
-1	109107	rs201432136	G	GT	67	PASS	AA=G;AC=63;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2184;ASN_AF=0.03;AVGPOST=0.8840;ERATE=0.0122;EUR_AF=0.04;LDAF=0.0890;RSQ=0.3660;THETA=0.0210;VT=INDEL
-1	111513	rs199911222	C	CTA	249	PASS	AA=.;AC=58;AF=0.03;AFR_AF=0.09;AMR_AF=0.03;AN=2184;ASN_AF=0.0017;AVGPOST=0.9145;ERATE=0.0024;EUR_AF=0.0013;LDAF=0.0665;RSQ=0.4694;THETA=0.0292;VT=INDEL
-1	111516	rs201010400	TG	T	164	PASS	AA=.;AC=55;AF=0.03;AFR_AF=0.09;AMR_AF=0.02;AN=2184;AVGPOST=0.9267;ERATE=0.0012;LDAF=0.0589;RSQ=0.5011;THETA=0.0098;VT=INDEL
-1	114699	rs187571096	A	G	100	PASS	AVGPOST=0.9936;ERATE=0.0014;RSQ=0.4063;AN=2184;THETA=0.0220;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=4;LDAF=0.0050;AF=0.0018;AFR_AF=0.01
-1	114828	rs201824320	GA	G	71	PASS	AA=GA;AC=37;AF=0.02;AFR_AF=0.02;AMR_AF=0.02;AN=2184;ASN_AF=0.04;AVGPOST=0.8268;ERATE=0.0091;LDAF=0.1072;RSQ=0.2067;THETA=0.0057;VT=INDEL
-1	115729	rs199999500	GCACA	G	117	PASS	AA=.;AC=15;AF=0.01;AMR_AF=0.02;AN=2184;AVGPOST=0.9970;ERATE=0.0007;EUR_AF=0.01;LDAF=0.0088;RSQ=0.8387;THETA=0.0214;VT=INDEL
-1	115746	rs147538909	C	T	100	PASS	ERATE=0.0005;AN=2184;AC=45;VT=SNP;AA=.;THETA=0.0305;AVGPOST=0.9938;SNPSOURCE=LOWCOV;RSQ=0.8896;LDAF=0.0221;AF=0.02;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.05
-1	116549	rs190211768	C	T	100	PASS	ERATE=0.0082;THETA=0.0124;AVGPOST=0.8356;AN=2184;RSQ=0.1236;VT=SNP;AA=.;AC=10;LDAF=0.0915;SNPSOURCE=LOWCOV;AF=0.0046;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.0020;EUR_AF=0.0026
-1	120458	rs182017058	T	C	100	PASS	AVGPOST=0.5677;AN=2184;LDAF=0.3647;VT=SNP;AA=.;RSQ=0.2095;THETA=0.0353;ERATE=0.0065;SNPSOURCE=LOWCOV;AC=355;AF=0.16;ASN_AF=0.20;AMR_AF=0.17;AFR_AF=0.11;EUR_AF=0.17
-1	120705	rs4117992	T	C	100	PASS	AN=2184;LDAF=0.7775;ERATE=0.0100;VT=SNP;AA=.;AVGPOST=0.6866;AC=2000;SNPSOURCE=LOWCOV;THETA=0.0304;RSQ=0.2671;AF=0.92;ASN_AF=0.97;AMR_AF=0.95;AFR_AF=0.74;EUR_AF=0.97
-1	120717	rs190208468	G	A	100	PASS	THETA=0.0199;AVGPOST=0.9248;RSQ=0.0923;AN=2184;VT=SNP;AA=.;LDAF=0.0393;ERATE=0.0049;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01
-1	120983	rs182468771	C	T	100	PASS	LDAF=0.1947;AN=2184;AC=133;RSQ=0.3091;VT=SNP;AA=.;ERATE=0.0122;AVGPOST=0.7375;SNPSOURCE=LOWCOV;THETA=0.0225;AF=0.06;ASN_AF=0.03;AMR_AF=0.09;AFR_AF=0.04;EUR_AF=0.09
-1	121009	rs1851943	C	T	100	PASS	AC=464;ERATE=0.0237;AN=2184;RSQ=0.3182;VT=SNP;AA=.;AVGPOST=0.6419;SNPSOURCE=LOWCOV;LDAF=0.3572;THETA=0.0113;AF=0.21;ASN_AF=0.13;AMR_AF=0.27;AFR_AF=0.26;EUR_AF=0.22
-1	126108	rs146756510	G	A	100	PASS	ERATE=0.0023;AC=126;RSQ=0.6899;AN=2184;THETA=0.0038;VT=SNP;AA=.;LDAF=0.0781;SNPSOURCE=LOWCOV;AVGPOST=0.9469;AF=0.06;ASN_AF=0.01;AMR_AF=0.13;AFR_AF=0.08;EUR_AF=0.04
-1	126113	rs79114531	C	A	100	PASS	RSQ=0.6875;AC=2069;AN=2184;ERATE=0.0024;VT=SNP;AA=.;SNPSOURCE=LOWCOV;THETA=0.0151;AVGPOST=0.9450;LDAF=0.9281;AF=0.95;ASN_AF=1.00;AMR_AF=0.97;AFR_AF=0.79;EUR_AF=1.00
-1	128658	rs185320873	G	A	100	PASS	AVGPOST=0.9994;RSQ=0.5869;AN=2184;THETA=0.0245;VT=SNP;AA=.;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013
-1	133013	rs149496965	C	T	100	PASS	LDAF=0.0133;AN=2184;THETA=0.0131;RSQ=0.5517;AVGPOST=0.9869;VT=SNP;AA=.;ERATE=0.0011;AC=15;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.03
-1	135032	rs148209574	G	A	100	PASS	ERATE=0.0036;AVGPOST=0.9468;THETA=0.0181;LDAF=0.0898;AN=2184;VT=SNP;AA=.;AC=155;RSQ=0.7186;SNPSOURCE=LOWCOV;AF=0.07;ASN_AF=0.01;AMR_AF=0.14;AFR_AF=0.10;EUR_AF=0.07
-1	135040	rs141523926	T	C	100	PASS	AVGPOST=0.9321;AN=2184;VT=SNP;AA=.;ERATE=0.0075;LDAF=0.0716;RSQ=0.5453;SNPSOURCE=LOWCOV;AC=96;THETA=0.0248;AF=0.04;ASN_AF=0.07;AMR_AF=0.04;AFR_AF=0.02;EUR_AF=0.04
-1	135203	rs147502335	G	A	100	PASS	ERATE=0.0005;AVGPOST=0.9868;AC=28;RSQ=0.7032;AN=2184;VT=SNP;AA=.;THETA=0.0066;SNPSOURCE=LOWCOV;LDAF=0.0179;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.03
-1	137801	rs191107331	G	A	100	PASS	AN=2184;VT=SNP;AA=.;AVGPOST=0.9976;RSQ=0.5379;THETA=0.0086;ERATE=0.0008;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01
-1	137825	rs147252685	G	A	100	PASS	ERATE=0.0021;AVGPOST=0.9146;AC=226;THETA=0.0317;AN=2184;LDAF=0.1383;VT=SNP;AA=.;RSQ=0.7019;SNPSOURCE=LOWCOV;AF=0.10;ASN_AF=0.02;AMR_AF=0.17;AFR_AF=0.01;EUR_AF=0.19
-1	139479	rs182357477	C	T	100	PASS	ERATE=0.0004;AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;AA=.;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0101;AF=0.0005;EUR_AF=0.0013
-1	161483	rs189086610	C	G	100	PASS	AVGPOST=0.8457;AN=2184;THETA=0.0338;RSQ=0.2084;VT=SNP;AA=.;LDAF=0.0952;SNPSOURCE=LOWCOV;AC=36;ERATE=0.0041;AF=0.02;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.01
-1	161488	rs193081027	C	T	100	PASS	AC=30;ERATE=0.0063;AN=2184;AVGPOST=0.8463;THETA=0.0206;VT=SNP;AA=.;LDAF=0.0911;SNPSOURCE=LOWCOV;RSQ=0.1885;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.01
-1	162463	rs143399298	T	C	100	PASS	ERATE=0.0027;AVGPOST=0.9658;AN=2184;LDAF=0.0760;THETA=0.0234;VT=SNP;AA=.;RSQ=0.8017;SNPSOURCE=LOWCOV;AC=142;AF=0.07;ASN_AF=0.0035;AMR_AF=0.09;AFR_AF=0.07;EUR_AF=0.09
-1	165954	rs200989943	GAATA	G	64	PASS	AA=GAATA;AC=41;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2184;ASN_AF=0.01;AVGPOST=0.6517;ERATE=0.0113;EUR_AF=0.03;LDAF=0.2128;RSQ=0.0998;THETA=0.0393;VT=INDEL
-1	168373	rs183198872	C	T	100	PASS	RSQ=0.1972;ERATE=0.0057;THETA=0.0229;AN=2184;VT=SNP;AA=.;AC=51;LDAF=0.1487;AVGPOST=0.7604;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.03
-1	168964	rs187450123	A	G	100	PASS	AVGPOST=0.6568;AN=2184;ERATE=0.0115;VT=SNP;AA=.;AC=54;THETA=0.0201;SNPSOURCE=LOWCOV;LDAF=0.2153;RSQ=0.1400;AF=0.02;ASN_AF=0.04;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.03
-1	171529	rs191891026	A	G	100	PASS	RSQ=0.1588;THETA=0.0180;AN=2184;VT=SNP;AA=.;LDAF=0.0972;SNPSOURCE=LOWCOV;ERATE=0.0040;AVGPOST=0.8299;AC=25;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02
-1	171841	rs184235219	A	G	100	PASS	LDAF=0.1067;ERATE=0.0073;AN=2184;AC=8;VT=SNP;AA=.;AVGPOST=0.8061;SNPSOURCE=LOWCOV;RSQ=0.1101;THETA=0.0152;AF=0.0037;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.0020;EUR_AF=0.01
-1	172595	rs187071114	G	A	100	PASS	RSQ=0.2299;AN=2184;THETA=0.0191;VT=SNP;AA=.;LDAF=0.3463;AVGPOST=0.5901;SNPSOURCE=LOWCOV;AC=375;ERATE=0.0109;AF=0.17;ASN_AF=0.19;AMR_AF=0.19;AFR_AF=0.06;EUR_AF=0.22
-1	173709	rs192722547	A	C	100	PASS	THETA=0.0285;AN=2184;AC=159;RSQ=0.2308;ERATE=0.0126;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AVGPOST=0.6564;LDAF=0.2510;AF=0.07;ASN_AF=0.07;AMR_AF=0.07;AFR_AF=0.05;EUR_AF=0.09
-1	227622	rs184145725	C	T	100	PASS	THETA=0.0184;AN=2184;RSQ=0.5273;VT=SNP;AA=.;AVGPOST=0.9799;SNPSOURCE=LOWCOV;AC=21;ERATE=0.0022;LDAF=0.0179;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01
-1	230433	rs190807317	T	C	100	PASS	ERATE=0.0042;AN=2184;VT=SNP;AA=.;THETA=0.0140;SNPSOURCE=LOWCOV;AVGPOST=0.9559;AC=21;RSQ=0.3424;LDAF=0.0300;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01
-1	233473	rs115354837	C	G	100	PASS	AN=2184;AC=390;ERATE=0.0025;AVGPOST=0.9128;VT=SNP;AA=.;LDAF=0.2047;SNPSOURCE=LOWCOV;RSQ=0.7996;THETA=0.0107;AF=0.18;ASN_AF=0.12;AMR_AF=0.12;AFR_AF=0.40;EUR_AF=0.11
-1	233476	rs141415251	G	A	100	PASS	THETA=0.0199;LDAF=0.0078;AN=2184;AVGPOST=0.9935;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0022;RSQ=0.6319;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01
-1	233586	rs202245468	CCT	C	219	PASS	AA=CCT;AC=51;AF=0.02;AFR_AF=0.02;AMR_AF=0.02;AN=2184;ASN_AF=0.03;AVGPOST=0.9297;ERATE=0.0092;EUR_AF=0.02;LDAF=0.0586;RSQ=0.4246;THETA=0.0185;VT=INDEL
-1	234432	rs8179455	A	G	100	PASS	RSQ=0.7901;ERATE=0.0168;AN=2184;LDAF=0.1339;VT=SNP;AA=.;THETA=0.0217;SNPSOURCE=LOWCOV;AC=252;AVGPOST=0.9437;AF=0.12;ASN_AF=0.08;AMR_AF=0.17;AFR_AF=0.19;EUR_AF=0.07
-1	237877	rs181999503	C	T	100	PASS	ERATE=0.0005;AN=2184;THETA=0.0038;VT=SNP;AA=.;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;RSQ=0.4509;AF=0.0005;ASN_AF=0.0017
-1	238369	rs200500460	G	GT	117	PASS	AA=G;AC=7;AF=0.0032;AFR_AF=0.01;AMR_AF=0.01;AN=2184;AVGPOST=0.9691;ERATE=0.0032;LDAF=0.0188;RSQ=0.2293;THETA=0.0249;VT=INDEL
-1	239339	rs184451216	A	G	100	PASS	AN=2184;THETA=0.0060;VT=SNP;AA=.;AVGPOST=0.9840;LDAF=0.0170;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=25;RSQ=0.6024;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.01
-1	239599	rs201588983	CTAAAA	C	28	PASS	AA=CTAAAA;AC=6;AF=0.0027;AFR_AF=0.01;AN=2184;AVGPOST=0.9255;ERATE=0.0049;LDAF=0.0407;RSQ=0.1292;THETA=0.0230;VT=INDEL
-1	240789	rs147589465	T	G	100	PASS	AN=2184;VT=SNP;AA=.;THETA=0.0108;AVGPOST=0.9671;ERATE=0.0035;AC=41;SNPSOURCE=LOWCOV;RSQ=0.5423;LDAF=0.0309;AF=0.02;ASN_AF=0.04;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01
-1	241320	rs79974410	A	G	100	PASS	AVGPOST=0.8177;AN=2184;ERATE=0.0126;VT=SNP;AA=.;THETA=0.0084;RSQ=0.4889;SNPSOURCE=LOWCOV;LDAF=0.1931;AC=252;AF=0.12;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.10;EUR_AF=0.07
-1	243782	rs181434479	C	A	100	PASS	AC=7;AN=2184;LDAF=0.0043;RSQ=0.6806;VT=SNP;AA=.;THETA=0.0142;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9965;AF=0.0032;ASN_AF=0.01
-1	246060	rs185479292	G	A	100	PASS	ERATE=0.0005;AN=2184;THETA=0.0038;VT=SNP;AA=.;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5771;LDAF=0.0008;AF=0.0005;AFR_AF=0.0020
-1	247916	rs202029170	CAGG	C	163	PASS	AA=CAGG;AC=162;AF=0.07;AFR_AF=0.14;AMR_AF=0.04;AN=2184;ASN_AF=0.09;AVGPOST=0.7947;ERATE=0.0018;EUR_AF=0.04;LDAF=0.1696;RSQ=0.3977;THETA=0.0176;VT=INDEL
-1	249275	rs200079338	G	GT	129	PASS	AA=.;AC=300;AF=0.14;AFR_AF=0.03;AMR_AF=0.10;AN=2184;ASN_AF=0.24;AVGPOST=0.8811;ERATE=0.0053;EUR_AF=0.15;LDAF=0.1723;RSQ=0.6986;THETA=0.0050;VT=INDEL
-1	249276	rs115018998	T	C	100	PASS	AVGPOST=0.9903;THETA=0.0118;AN=2184;AC=13;VT=SNP;AA=.;ERATE=0.0010;SNPSOURCE=LOWCOV;RSQ=0.5651;LDAF=0.0104;AF=0.01;AMR_AF=0.01;EUR_AF=0.01
-1	251627	rs72502741	AC	A	359	PASS	AA=AC;AC=302;AF=0.14;AFR_AF=0.02;AMR_AF=0.11;AN=2184;ASN_AF=0.24;AVGPOST=0.8997;ERATE=0.0033;EUR_AF=0.16;LDAF=0.1728;RSQ=0.7565;THETA=0.0144;VT=INDEL
-1	252144	rs191013370	T	C	100	PASS	ERATE=0.0004;LDAF=0.0009;AN=2184;THETA=0.0131;RSQ=0.5389;VT=SNP;AA=.;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017
-1	254186	rs148663102	T	C	100	PASS	RSQ=0.6519;AN=2184;AC=40;LDAF=0.0275;VT=SNP;AA=.;SNPSOURCE=LOWCOV;THETA=0.0079;ERATE=0.0007;AVGPOST=0.9780;AF=0.02;ASN_AF=0.06;AFR_AF=0.0020;EUR_AF=0.0026
-1	255923	rs199745078	G	GTC	358	PASS	AA=.;AC=776;AF=0.36;AFR_AF=0.40;AMR_AF=0.32;AN=2184;ASN_AF=0.38;AVGPOST=0.7344;ERATE=0.0210;EUR_AF=0.32;LDAF=0.4077;RSQ=0.5159;THETA=0.0199;VT=INDEL
-1	256022	rs181053586	A	G	100	PASS	AN=2184;LDAF=0.0040;VT=SNP;AA=.;AVGPOST=0.9953;RSQ=0.4743;SNPSOURCE=LOWCOV;AC=4;THETA=0.0107;ERATE=0.0007;AF=0.0018;AMR_AF=0.01
-1	256586	rs140435168	T	G	100	PASS	AN=2184;AC=40;AVGPOST=0.9893;VT=SNP;AA=.;RSQ=0.8083;THETA=0.0358;ERATE=0.0016;LDAF=0.0231;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.01;AFR_AF=0.07
-1	258589	rs185940535	C	A	100	PASS	LDAF=0.0035;AN=2184;VT=SNP;AA=.;THETA=0.0146;RSQ=0.5577;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;AVGPOST=0.9965;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.0040
-1	259207	rs143738566	A	C	100	PASS	AC=7;RSQ=0.6249;AN=2184;LDAF=0.0054;VT=SNP;AA=.;THETA=0.0247;AVGPOST=0.9956;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0032;ASN_AF=0.01
-1	261542	rs192416692	T	C	100	PASS	RSQ=0.3631;THETA=0.0239;AN=2184;VT=SNP;AA=.;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0040;AVGPOST=0.9850;LDAF=0.0108;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.01
-1	356537	rs183318141	G	A	100	PASS	THETA=0.0207;ERATE=0.0013;RSQ=0.1472;AN=2184;LDAF=0.0124;VT=SNP;AA=.;AVGPOST=0.9771;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01
-1	358440	rs187762289	T	A	100	PASS	AC=12;AN=2184;LDAF=0.1166;VT=SNP;AA=.;THETA=0.0066;SNPSOURCE=LOWCOV;AVGPOST=0.7896;ERATE=0.0135;RSQ=0.1099;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0013
-1	362895	rs190726048	A	G	100	PASS	AC=7;LDAF=0.0237;AN=2184;THETA=0.0090;VT=SNP;AA=.;RSQ=0.1566;SNPSOURCE=LOWCOV;ERATE=0.0053;AVGPOST=0.9570;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013
-1	362905	rs182870673	T	G	100	PASS	AC=205;AN=2184;RSQ=0.4530;VT=SNP;AA=.;LDAF=0.1882;SNPSOURCE=LOWCOV;THETA=0.0169;ERATE=0.0109;AVGPOST=0.7977;AF=0.09;ASN_AF=0.07;AMR_AF=0.07;AFR_AF=0.26;EUR_AF=0.02
-1	362907	rs138802168	G	C	100	PASS	AVGPOST=0.9154;THETA=0.0143;RSQ=0.4127;AN=2184;ERATE=0.0047;VT=SNP;AA=.;LDAF=0.0676;SNPSOURCE=LOWCOV;AC=63;AF=0.03;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.08;EUR_AF=0.01
-1	416202	rs150426163	G	T	100	PASS	LDAF=0.0141;AA=G;AN=2184;THETA=0.0242;RSQ=0.3187;AC=8;ERATE=0.0044;AVGPOST=0.9791;VT=SNP;SNPSOURCE=LOWCOV;AF=0.0037;AFR_AF=0.02
-1	522476	rs188307237	A	T	100	PASS	ERATE=0.0005;AVGPOST=0.9986;AN=2184;VT=SNP;RSQ=0.4304;AA=A;THETA=0.0142;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.0020
-1	523471	rs192687139	T	C	100	PASS	LDAF=0.3603;AA=C;AN=2184;RSQ=0.1770;VT=SNP;ERATE=0.0134;THETA=0.0203;SNPSOURCE=LOWCOV;AVGPOST=0.5701;AC=326;AF=0.15;ASN_AF=0.15;AMR_AF=0.21;AFR_AF=0.13;EUR_AF=0.13
-1	525698	rs2808353	A	G	100	PASS	ERATE=0.0023;AN=2184;THETA=0.0138;VT=SNP;RSQ=0.4998;LDAF=0.0044;SNPSOURCE=LOWCOV;AC=4;AA=a;AVGPOST=0.9950;AF=0.0018;ASN_AF=0.0017;AFR_AF=0.0020;EUR_AF=0.0026
-1	526057	rs141459107	T	C	100	PASS	AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0154;ERATE=0.0012;RSQ=0.3949;AC=11;AVGPOST=0.9800;LDAF=0.0146;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;EUR_AF=0.01
-1	526692	rs143629215	C	T	100	PASS	AA=C;AN=2184;VT=SNP;AC=10;THETA=0.0033;LDAF=0.0072;ERATE=0.0008;RSQ=0.6954;AVGPOST=0.9938;SNPSOURCE=LOWCOV;AF=0.0046;AFR_AF=0.02
-1	526735	rs187540194	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;THETA=0.0191;RSQ=0.5965;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;AF=0.0009;AFR_AF=0.0041
-1	526771	rs140972083	G	C	100	PASS	RSQ=0.6603;AA=G;AN=2184;VT=SNP;LDAF=0.0072;ERATE=0.0011;THETA=0.0292;SNPSOURCE=LOWCOV;AC=11;AVGPOST=0.9932;AF=0.01;AFR_AF=0.02;EUR_AF=0.0013
-1	526832	rs192574259	G	C	100	PASS	AA=g;AVGPOST=0.9552;AN=2184;RSQ=0.3500;VT=SNP;AC=22;ERATE=0.0011;SNPSOURCE=LOWCOV;THETA=0.0110;LDAF=0.0318;AF=0.01;AMR_AF=0.02;EUR_AF=0.02
-1	526840	rs60396226	T	C	100	PASS	AN=2184;RSQ=0.5535;AVGPOST=0.8399;VT=SNP;THETA=0.0087;AC=230;SNPSOURCE=LOWCOV;LDAF=0.1660;AA=t;ERATE=0.0091;AF=0.11;ASN_AF=0.06;AMR_AF=0.04;AFR_AF=0.35;EUR_AF=0.01
-1	526970	rs60791385	T	C	100	PASS	LDAF=0.0666;AVGPOST=0.9085;AN=2184;THETA=0.0242;AC=57;ERATE=0.0089;VT=SNP;RSQ=0.3868;SNPSOURCE=LOWCOV;AA=N;AF=0.03;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.07;EUR_AF=0.01
-1	527038	rs189135631	C	T	100	PASS	THETA=0.0048;RSQ=0.3706;AN=2184;VT=SNP;AA=c;ERATE=0.0050;SNPSOURCE=LOWCOV;AC=53;LDAF=0.0702;AVGPOST=0.9006;AF=0.02;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.0013
-1	527157	rs143773298	A	G	100	PASS	AVGPOST=0.9758;RSQ=0.5148;AN=2184;VT=SNP;AC=22;AA=A;LDAF=0.0194;SNPSOURCE=LOWCOV;THETA=0.0058;ERATE=0.0022;AF=0.01;AFR_AF=0.04
-1	527186	rs111227194	A	G	100	PASS	RSQ=0.8105;AN=2184;LDAF=0.0503;AC=93;VT=SNP;AA=A;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9739;THETA=0.0135;AF=0.04;AMR_AF=0.01;AFR_AF=0.18;EUR_AF=0.0040
-1	527207	rs112901516	A	G	100	PASS	AVGPOST=0.9749;AC=94;AN=2184;THETA=0.0218;VT=SNP;AA=A;LDAF=0.0508;SNPSOURCE=LOWCOV;RSQ=0.8208;ERATE=0.0007;AF=0.04;AMR_AF=0.01;AFR_AF=0.18;EUR_AF=0.0026
-1	527219	rs181574093	G	A	100	PASS	AC=12;AA=G;AN=2184;RSQ=0.6006;VT=SNP;AVGPOST=0.9922;LDAF=0.0087;ERATE=0.0011;SNPSOURCE=LOWCOV;THETA=0.0042;AF=0.01;AMR_AF=0.01;AFR_AF=0.02
-1	529782	rs144425991	C	T	100	PASS	AA=C;RSQ=0.6854;AN=2184;THETA=0.0234;VT=SNP;LDAF=0.0747;SNPSOURCE=LOWCOV;AC=114;ERATE=0.0056;AVGPOST=0.9456;AF=0.05;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.17;EUR_AF=0.01
-1	532051	rs184296032	A	C	100	PASS	AN=2184;RSQ=0.8251;ERATE=0.0032;VT=SNP;AA=A;SNPSOURCE=LOWCOV;LDAF=0.0244;THETA=0.0233;AVGPOST=0.9885;AC=42;AF=0.02;AMR_AF=0.01;AFR_AF=0.08
-1	532258	rs200842330	AAAT	A	58	PASS	AA=.;AC=32;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2184;ASN_AF=0.01;AVGPOST=0.9511;ERATE=0.0025;EUR_AF=0.02;LDAF=0.0375;RSQ=0.4287;THETA=0.0336;VT=INDEL
-1	532413	rs190029356	G	A	100	PASS	RSQ=0.5650;AA=G;AN=2184;ERATE=0.0009;LDAF=0.0046;VT=SNP;AVGPOST=0.9953;AC=5;THETA=0.0203;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.01;AFR_AF=0.0020;EUR_AF=0.0026
-1	532447	rs181202492	A	G	100	PASS	ERATE=0.0005;AVGPOST=0.9986;LDAF=0.0016;AN=2184;VT=SNP;AA=A;RSQ=0.5987;THETA=0.0081;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01
-1	533162	rs112369404	C	T	100	PASS	AC=7;ERATE=0.0005;AA=C;RSQ=0.6012;THETA=0.0118;AN=2184;VT=SNP;LDAF=0.0063;SNPSOURCE=LOWCOV;AVGPOST=0.9937;AF=0.0032;AFR_AF=0.01
-1	533163	rs186223690	G	A	100	PASS	LDAF=0.0021;AA=G;AN=2184;AVGPOST=0.9967;VT=SNP;THETA=0.0146;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=1;RSQ=0.2877;AF=0.0005;ASN_AF=0.0017
-1	533170	rs114617477	G	T	100	PASS	RSQ=0.6798;AVGPOST=0.9512;AC=94;AA=T;AN=2184;LDAF=0.0609;ERATE=0.0047;VT=SNP;THETA=0.0091;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.01;AMR_AF=0.04;AFR_AF=0.13;EUR_AF=0.02
-1	533179	rs111501994	A	G	100	PASS	AC=52;AN=2184;LDAF=0.0394;VT=SNP;AVGPOST=0.9627;THETA=0.0262;RSQ=0.6274;ERATE=0.0059;SNPSOURCE=LOWCOV;AA=a;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.09;EUR_AF=0.0026
-1	533187	rs190848289	C	T	100	PASS	THETA=0.0096;AA=C;AN=2184;VT=SNP;RSQ=0.6451;AVGPOST=0.9879;ERATE=0.0020;SNPSOURCE=LOWCOV;AC=21;LDAF=0.0144;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04
-1	533198	rs78497331	C	T	100	PASS	AA=C;THETA=0.0229;RSQ=0.6218;AN=2184;LDAF=0.1290;VT=SNP;AC=194;AVGPOST=0.8972;SNPSOURCE=LOWCOV;ERATE=0.0135;AF=0.09;ASN_AF=0.08;AMR_AF=0.06;AFR_AF=0.20;EUR_AF=0.03
-1	534192	rs6680723	C	T	100	PASS	THETA=0.0250;LDAF=0.2793;AA=T;AN=2184;AC=469;AVGPOST=0.8367;VT=SNP;ERATE=0.0182;RSQ=0.5894;SNPSOURCE=LOWCOV;AF=0.21;ASN_AF=0.17;AMR_AF=0.29;AFR_AF=0.23;EUR_AF=0.20
-1	534198	rs6680725	C	T	100	PASS	ERATE=0.0152;AA=T;AN=2184;RSQ=0.7061;LDAF=0.1352;AC=236;VT=SNP;THETA=0.0057;AVGPOST=0.9211;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.07;AMR_AF=0.10;AFR_AF=0.22;EUR_AF=0.07
-1	534220	rs6702333	G	A	100	PASS	AVGPOST=0.9936;ERATE=0.0023;AA=G;AN=2184;AC=8;VT=SNP;THETA=0.0072;RSQ=0.5987;LDAF=0.0063;SNPSOURCE=LOWCOV;AF=0.0037;AFR_AF=0.01;EUR_AF=0.0013
-1	534297	rs190879900	T	C	100	PASS	ERATE=0.0005;LDAF=0.0013;AA=T;AN=2184;VT=SNP;RSQ=0.3931;SNPSOURCE=LOWCOV;AC=1;THETA=0.0241;AVGPOST=0.9984;AF=0.0005;EUR_AF=0.0013
-1	534540	rs183186584	G	T	100	PASS	AA=G;AN=2184;AVGPOST=0.9972;VT=SNP;ERATE=0.0010;LDAF=0.0028;SNPSOURCE=LOWCOV;THETA=0.0225;RSQ=0.5170;AC=3;AF=0.0014;EUR_AF=0.0040
-1	534545	rs145971835	G	A	100	PASS	AA=G;AN=2184;AVGPOST=0.8580;VT=SNP;THETA=0.0059;SNPSOURCE=LOWCOV;LDAF=0.2147;ERATE=0.0087;AC=355;RSQ=0.6386;AF=0.16;ASN_AF=0.23;AMR_AF=0.19;AFR_AF=0.21;EUR_AF=0.07
-1	534547	rs188376087	G	A	100	PASS	AA=G;AN=2184;AC=49;VT=SNP;THETA=0.0280;RSQ=0.6395;LDAF=0.0351;ERATE=0.0033;AVGPOST=0.9733;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.03;AFR_AF=0.0020;EUR_AF=0.05
-1	535696	rs151048542	G	A	100	PASS	AC=17;RSQ=0.6258;AA=G;AN=2184;ERATE=0.0009;VT=SNP;THETA=0.0089;LDAF=0.0143;SNPSOURCE=LOWCOV;AVGPOST=0.9860;AF=0.01;AFR_AF=0.03
-1	540345	rs201534199	AATTGT	A	219	PASS	AA=.;AC=78;AF=0.04;AFR_AF=0.05;AMR_AF=0.02;AN=2184;ASN_AF=0.07;AVGPOST=0.7057;ERATE=0.0169;EUR_AF=0.01;LDAF=0.1937;RSQ=0.2031;THETA=0.0111;VT=INDEL
-1	540540	rs199511579	GC	G	5	PASS	AA=.;AC=20;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2184;AVGPOST=0.8972;ERATE=0.0095;EUR_AF=0.01;LDAF=0.0615;RSQ=0.1917;THETA=0.0037;VT=INDEL
-1	540975	rs80246094	G	A	100	PASS	THETA=0.0238;AA=G;AN=2184;VT=SNP;LDAF=0.1157;ERATE=0.0114;RSQ=0.6122;AVGPOST=0.9121;SNPSOURCE=LOWCOV;AC=170;AF=0.08;ASN_AF=0.08;AMR_AF=0.07;AFR_AF=0.07;EUR_AF=0.08
-1	549548	rs191550559	T	G	100	PASS	AA=T;AN=2184;VT=SNP;ERATE=0.0010;LDAF=0.0023;AC=0;THETA=0.0162;RSQ=0.0868;AVGPOST=0.9954;SNPSOURCE=LOWCOV;AF=0
-1	553346	rs183055671	C	G	100	PASS	ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9979;THETA=0.0175;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;RSQ=0.3911;AF=0.0005;EUR_AF=0.0013
-1	559081	rs188144421	G	C	100	PASS	AC=7;THETA=0.0238;AA=G;AN=2184;AVGPOST=0.9779;ERATE=0.0032;VT=SNP;LDAF=0.0134;RSQ=0.2658;SNPSOURCE=LOWCOV;AF=0.0032;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0026
-1	559889	rs140313358	A	G	100	PASS	THETA=0.0159;LDAF=0.1597;AN=2184;AC=124;VT=SNP;AA=A;RSQ=0.3349;AVGPOST=0.7987;SNPSOURCE=LOWCOV;ERATE=0.0145;AF=0.06;ASN_AF=0.05;AMR_AF=0.07;AFR_AF=0.10;EUR_AF=0.03
-1	561200	rs141958416	C	T	100	PASS	AA=C;RSQ=0.5884;AN=2184;VT=SNP;AVGPOST=0.9647;THETA=0.0071;ERATE=0.0011;SNPSOURCE=LOWCOV;LDAF=0.0348;AC=39;AF=0.02;AMR_AF=0.01;AFR_AF=0.07
-1	563625	rs191286235	T	C	100	PASS	AA=C;ERATE=0.0152;AN=2184;AVGPOST=0.6693;VT=SNP;RSQ=0.1227;AC=2115;THETA=0.0122;LDAF=0.7973;SNPSOURCE=LOWCOV;AF=0.97;ASN_AF=0.98;AMR_AF=0.98;AFR_AF=0.95;EUR_AF=0.97
-1	566843	rs182069836	T	C	100	PASS	THETA=0.0088;LDAF=0.0052;AN=2184;AVGPOST=0.9934;VT=SNP;RSQ=0.4621;AA=-;ERATE=0.0008;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;ASN_AF=0.0035;EUR_AF=0.0040
-1	566847	rs187911910	T	C	100	PASS	ERATE=0.0005;LDAF=0.0013;RSQ=0.3895;AN=2184;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AC=1;THETA=0.0152;AVGPOST=0.9984;AF=0.0005;AFR_AF=0.0020
-1	566939	rs192480211	C	T	100	PASS	AVGPOST=0.9945;LDAF=0.0041;AN=2184;RSQ=0.4393;VT=SNP;THETA=0.0104;AA=-;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;AF=0.0018;AFR_AF=0.01
-1	567047	rs185393250	T	C	100	PASS	AVGPOST=0.9963;AN=2184;THETA=0.0175;VT=SNP;RSQ=0.4477;LDAF=0.0029;AA=-;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01
-1	567098	rs189927567	C	T	100	PASS	LDAF=0.0058;AN=2184;AC=8;VT=SNP;THETA=0.0144;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9951;RSQ=0.6352;AF=0.0037;AFR_AF=0.02
-1	568709	rs148329687	A	G	100	PASS	THETA=0.0255;ERATE=0.0132;AVGPOST=0.9114;AN=2184;LDAF=0.1251;VT=SNP;AA=-;AC=201;SNPSOURCE=LOWCOV;RSQ=0.6769;AF=0.09;ASN_AF=0.02;AMR_AF=0.06;AFR_AF=0.22;EUR_AF=0.08
-1	568745	rs200850333	C	CCA	282	PASS	AA=CCA;AC=197;AF=0.09;AFR_AF=0.21;AMR_AF=0.06;AN=2184;ASN_AF=0.04;AVGPOST=0.8910;ERATE=0.0093;EUR_AF=0.06;LDAF=0.1362;RSQ=0.6393;THETA=0.0239;VT=INDEL
-1	570337	rs193042102	G	T	100	PASS	AA=G;AN=2184;ERATE=0.0009;VT=SNP;RSQ=0.2863;AVGPOST=0.9959;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=1;THETA=0.0200;AF=0.0005;AMR_AF=0.0028
-1	570573	rs184868172	T	G	100	PASS	AVGPOST=0.9977;LDAF=0.0016;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0200;ERATE=0.0007;RSQ=0.3221;AF=0.0005;EUR_AF=0.0013
-1	570663	rs189669695	C	T	100	PASS	AA=C;AN=2184;ERATE=0.0009;THETA=0.0139;VT=SNP;LDAF=0.0038;RSQ=0.4536;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9955;AF=0.0018;AMR_AF=0.01;AFR_AF=0.0041
-1	574151	rs74047006	A	T	100	PASS	AVGPOST=0.9106;AN=2184;AC=132;VT=SNP;AA=A;THETA=0.0153;RSQ=0.6125;SNPSOURCE=LOWCOV;ERATE=0.0056;LDAF=0.0961;AF=0.06;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.16;EUR_AF=0.03
-1	574329	rs185282956	A	G	100	PASS	RSQ=0.2708;AA=G;AN=2184;VT=SNP;AVGPOST=0.9913;ERATE=0.0008;THETA=0.0049;SNPSOURCE=LOWCOV;LDAF=0.0051;AC=2;AF=0.0009;AFR_AF=0.0041
-1	580606	rs201531578	CT	C	41	PASS	AA=.;AC=21;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2184;ASN_AF=0.0017;AVGPOST=0.9539;ERATE=0.0041;EUR_AF=0.0026;LDAF=0.0314;RSQ=0.3531;THETA=0.0293;VT=INDEL
-1	585859	rs189649164	G	A	100	PASS	LDAF=0.0021;THETA=0.0035;AA=G;AN=2184;VT=SNP;RSQ=0.2938;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9968;ERATE=0.0007;AF=0.0005;EUR_AF=0.0013
-1	585863	rs181868443	C	T	100	PASS	THETA=0.0065;LDAF=0.0052;AA=C;AN=2184;AVGPOST=0.9917;VT=SNP;RSQ=0.2613;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;EUR_AF=0.0040
-1	589082	rs187234864	G	A	100	PASS	LDAF=0.1513;RSQ=0.4894;AVGPOST=0.8541;AA=G;AN=2184;VT=SNP;THETA=0.0108;ERATE=0.0207;AC=186;SNPSOURCE=LOWCOV;AF=0.09;ASN_AF=0.06;AMR_AF=0.13;AFR_AF=0.09;EUR_AF=0.08
-1	597681	rs191662915	T	C	100	PASS	AN=2184;VT=SNP;AA=.;THETA=0.0196;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0007;RSQ=0.3649;AVGPOST=0.9982;AF=0.0005;AMR_AF=0.0028
-1	600182	rs199991944	AG	A	75	PASS	AA=AG;AC=54;AF=0.02;AFR_AF=0.10;AMR_AF=0.01;AN=2184;ASN_AF=0.0017;AVGPOST=0.8301;ERATE=0.0091;EUR_AF=0.0040;LDAF=0.1088;RSQ=0.2532;THETA=0.0229;VT=INDEL
-1	600478	rs114979547	G	A	100	PASS	AN=2184;VT=SNP;AA=.;ERATE=0.0019;LDAF=0.1250;RSQ=0.7146;AVGPOST=0.9296;SNPSOURCE=LOWCOV;AC=209;THETA=0.0182;AF=0.10;ASN_AF=0.09;AMR_AF=0.07;AFR_AF=0.16;EUR_AF=0.07
-1	600495	rs147241137	G	C	100	PASS	AC=47;AVGPOST=0.9745;AN=2184;VT=SNP;AA=.;THETA=0.0112;LDAF=0.0322;SNPSOURCE=LOWCOV;ERATE=0.0015;RSQ=0.6881;AF=0.02;AMR_AF=0.01;AFR_AF=0.09;EUR_AF=0.0013
-1	601055	rs183469249	T	C	100	PASS	AN=2184;THETA=0.0175;LDAF=0.0018;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;RSQ=0.2995;AVGPOST=0.9974;AF=0.0005;ASN_AF=0.0017
-1	601141	rs140845213	C	T	100	PASS	RSQ=0.6949;AN=2184;THETA=0.0242;VT=SNP;AA=.;AC=234;ERATE=0.0065;SNPSOURCE=LOWCOV;AVGPOST=0.9191;LDAF=0.1375;AF=0.11;ASN_AF=0.10;AMR_AF=0.07;AFR_AF=0.17;EUR_AF=0.09
-1	601583	rs79221329	G	A	100	PASS	AVGPOST=0.9718;AN=2184;LDAF=0.0320;VT=SNP;AA=.;ERATE=0.0043;AC=44;RSQ=0.6185;SNPSOURCE=LOWCOV;THETA=0.0109;AF=0.02;ASN_AF=0.0017;AMR_AF=0.02;AFR_AF=0.07;EUR_AF=0.0013
-1	601705	rs200489239	GCAAA	G	167	PASS	AA=GCAAA;AC=10;AF=0.0046;AFR_AF=0.02;AMR_AF=0.0028;AN=2184;AVGPOST=0.9602;ERATE=0.0066;LDAF=0.0247;RSQ=0.2370;THETA=0.0171;VT=INDEL
-1	603331	rs186375515	T	C	100	PASS	THETA=0.0190;AN=2184;LDAF=0.0205;VT=SNP;AA=.;ERATE=0.0051;AVGPOST=0.9694;AC=15;SNPSOURCE=LOWCOV;RSQ=0.3377;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0040
-1	603505	rs140832136	A	C	100	PASS	AC=28;AN=2184;ERATE=0.0009;VT=SNP;AA=.;RSQ=0.6254;THETA=0.0383;AVGPOST=0.9815;LDAF=0.0209;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.03
-1	603515	rs190065153	C	A	100	PASS	AVGPOST=0.9718;AN=2184;RSQ=0.7790;VT=SNP;AA=.;AC=79;SNPSOURCE=LOWCOV;THETA=0.0107;ERATE=0.0006;LDAF=0.0475;AF=0.04;AMR_AF=0.01;AFR_AF=0.15
-1	603516	rs182349900	C	A	100	PASS	AN=2184;THETA=0.0335;LDAF=0.0477;ERATE=0.0009;RSQ=0.7782;VT=SNP;AA=.;AC=79;SNPSOURCE=LOWCOV;AVGPOST=0.9715;AF=0.04;AMR_AF=0.01;AFR_AF=0.15
-1	603589	rs149712121	A	C	100	PASS	RSQ=0.4843;AN=2184;LDAF=0.0040;VT=SNP;AA=.;THETA=0.0195;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AVGPOST=0.9951;AF=0.0014;ASN_AF=0.01
-1	603710	rs186580270	G	C	100	PASS	AN=2184;LDAF=0.0040;AVGPOST=0.9935;VT=SNP;AA=.;ERATE=0.0010;SNPSOURCE=LOWCOV;RSQ=0.3844;THETA=0.0271;AC=3;AF=0.0014;AFR_AF=0.01
-1	612688	rs201365517	TCTC	T	406	PASS	AA=TCTC;AC=77;AF=0.04;AFR_AF=0.01;AMR_AF=0.0028;AN=2184;ASN_AF=0.12;AVGPOST=0.8562;ERATE=0.0040;EUR_AF=0.01;LDAF=0.1048;RSQ=0.4011;THETA=0.0112;VT=INDEL
-1	618463	rs114496243	G	A	100	PASS	AC=437;THETA=0.0285;AN=2184;AVGPOST=0.9066;VT=SNP;AA=.;RSQ=0.7682;SNPSOURCE=LOWCOV;ERATE=0.0107;LDAF=0.2272;AF=0.20;ASN_AF=0.24;AMR_AF=0.17;AFR_AF=0.34;EUR_AF=0.09
-1	626686	rs200090570	CCT	C	106	PASS	AA=CCT;AC=24;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2184;ASN_AF=0.01;AVGPOST=0.9302;ERATE=0.0045;EUR_AF=0.01;LDAF=0.0444;RSQ=0.2666;THETA=0.0187;VT=INDEL
-1	633582	rs192643069	C	T	100	PASS	RSQ=0.0997;AN=2184;LDAF=0.1969;VT=SNP;AA=.;AC=31;THETA=0.0125;ERATE=0.0130;SNPSOURCE=LOWCOV;AVGPOST=0.6698;AF=0.01;ASN_AF=0.0035;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.02
-1	636673	rs140723072	C	T	100	PASS	AC=7;LDAF=0.0041;AN=2184;VT=SNP;AA=.;THETA=0.0196;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0006;RSQ=0.6738;AF=0.0032;AFR_AF=0.01
-1	636710	rs183948244	C	T	100	PASS	ERATE=0.0005;LDAF=0.0009;RSQ=0.5125;AN=2184;AVGPOST=0.9990;VT=SNP;AA=.;THETA=0.0309;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013
-1	636975	rs144572927	G	A	100	PASS	ERATE=0.0004;AC=52;AN=2184;LDAF=0.0304;VT=SNP;AA=.;RSQ=0.7804;SNPSOURCE=LOWCOV;AVGPOST=0.9819;THETA=0.0113;AF=0.02;AMR_AF=0.01;AFR_AF=0.10
-1	637753	rs188948234	C	A	100	PASS	AN=2184;VT=SNP;AA=.;ERATE=0.0010;LDAF=0.0025;SNPSOURCE=LOWCOV;THETA=0.0097;AVGPOST=0.9968;AC=2;RSQ=0.4418;AF=0.0009;EUR_AF=0.0026
-1	644420	rs144745434	T	C	100	PASS	ERATE=0.0004;AN=2184;AC=13;RSQ=0.8493;VT=SNP;AA=.;THETA=0.0103;AVGPOST=0.9973;LDAF=0.0063;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.03
-1	645399	rs192911354	T	C	100	PASS	THETA=0.0164;AVGPOST=0.9985;LDAF=0.0016;AN=2184;VT=SNP;AA=.;RSQ=0.5692;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AF=0.0009;AFR_AF=0.0041
-1	645605	rs185127847	T	A	100	PASS	RSQ=0.5500;AN=2184;AC=40;ERATE=0.0009;VT=SNP;AA=.;AVGPOST=0.9653;SNPSOURCE=LOWCOV;THETA=0.0029;LDAF=0.0341;AF=0.02;AMR_AF=0.02;AFR_AF=0.0020;EUR_AF=0.04
-1	658426	rs188842781	G	T	100	PASS	ERATE=0.0005;AN=2184;AVGPOST=0.9981;VT=SNP;AA=.;THETA=0.0103;LDAF=0.0020;SNPSOURCE=LOWCOV;RSQ=0.5921;AC=3;AF=0.0014;AMR_AF=0.01
-1	662571	rs191780594	C	T	100	PASS	AN=2184;AC=6;VT=SNP;AA=.;ERATE=0.0011;SNPSOURCE=LOWCOV;RSQ=0.3911;THETA=0.0051;AVGPOST=0.9885;LDAF=0.0082;AF=0.0027;ASN_AF=0.01
-1	662613	rs151190501	G	A	100	PASS	THETA=0.0132;AN=2184;AVGPOST=0.9871;LDAF=0.0106;VT=SNP;AA=.;RSQ=0.4740;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=11;AF=0.01;AMR_AF=0.0028;EUR_AF=0.01
-1	662622	rs61769339	G	A	100	PASS	AC=226;THETA=0.0083;AN=2184;ERATE=0.0009;LDAF=0.1207;VT=SNP;AA=.;RSQ=0.7613;AVGPOST=0.9290;SNPSOURCE=LOWCOV;AF=0.10;ASN_AF=0.09;AMR_AF=0.04;AFR_AF=0.16;EUR_AF=0.11
-1	664010	rs183901648	A	C	100	PASS	AVGPOST=0.7999;AN=2184;VT=SNP;AA=.;THETA=0.0017;ERATE=0.0059;SNPSOURCE=LOWCOV;RSQ=0.2099;AC=42;LDAF=0.1209;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.02
-1	668340	rs188337135	G	C	100	PASS	RSQ=0.7390;AN=2184;AVGPOST=0.9996;VT=SNP;AA=.;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0110;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017
-1	668346	rs115048193	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9985;AN=2184;VT=SNP;AA=.;LDAF=0.0029;THETA=0.0053;RSQ=0.7866;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01
-1	668374	rs138476838	G	A	100	PASS	ERATE=0.0005;RSQ=0.7959;AN=2184;AC=128;VT=SNP;AA=.;AVGPOST=0.9646;LDAF=0.0713;SNPSOURCE=LOWCOV;THETA=0.0069;AF=0.06;ASN_AF=0.22;AMR_AF=0.01;EUR_AF=0.0026
-1	668394	rs201221815	AG	A	131	PASS	AA=AG;AC=12;AF=0.01;AMR_AF=0.01;AN=2184;AVGPOST=0.9823;ERATE=0.0017;EUR_AF=0.01;LDAF=0.0144;RSQ=0.4324;THETA=0.0057;VT=INDEL
-1	669225	rs180753015	C	T	100	PASS	RSQ=0.4257;AN=2184;AC=13;ERATE=0.0034;VT=SNP;AA=.;LDAF=0.0167;SNPSOURCE=LOWCOV;AVGPOST=0.9751;THETA=0.0036;AF=0.01;AFR_AF=0.02;EUR_AF=0.0013
-1	669228	rs187185296	G	A	100	PASS	ERATE=0.0004;RSQ=0.5072;AN=2184;LDAF=0.0010;VT=SNP;AA=.;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;THETA=0.0052;AF=0.0005;EUR_AF=0.0013
-1	671782	rs190462060	C	A	100	PASS	THETA=0.0014;AN=2184;RSQ=0.6131;LDAF=0.0376;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=53;ERATE=0.0028;AVGPOST=0.9619;AF=0.02;AMR_AF=0.01;AFR_AF=0.10
-1	676127	rs150820983	C	T	100	PASS	ERATE=0.0004;RSQ=0.8535;AN=2184;AVGPOST=0.9962;VT=SNP;AA=.;SNPSOURCE=LOWCOV;LDAF=0.0111;AC=21;THETA=0.0129;AF=0.01;AMR_AF=0.01;EUR_AF=0.02
-1	679520	rs181877285	G	A	100	PASS	ERATE=0.0004;AN=2184;RSQ=0.7082;AVGPOST=0.9996;VT=SNP;AA=.;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0073;AF=0.0005;AFR_AF=0.0020
-1	691541	rs201999089	AT	A	93	PASS	AA=.;AC=259;AF=0.12;AFR_AF=0.04;AMR_AF=0.22;AN=2184;ASN_AF=0.05;AVGPOST=0.7781;ERATE=0.0039;EUR_AF=0.18;LDAF=0.2044;RSQ=0.4763;THETA=0.0064;VT=INDEL
-1	693562	rs186950395	T	C	100	PASS	ERATE=0.0004;RSQ=0.3509;AVGPOST=0.9977;LDAF=0.0016;AN=2184;VT=SNP;AA=.;THETA=0.0094;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017
-1	693625	rs190214723	T	C	100	PASS	RSQ=0.7408;AN=2184;ERATE=0.0009;VT=SNP;AA=.;THETA=0.0025;SNPSOURCE=LOWCOV;AVGPOST=0.9829;AC=39;LDAF=0.0248;AF=0.02;AMR_AF=0.02;EUR_AF=0.04
-1	693731	rs61769350	A	G	100	PASS	AN=2184;RSQ=0.9083;LDAF=0.1329;VT=SNP;AA=.;AC=275;AVGPOST=0.9716;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0006;AF=0.13;ASN_AF=0.11;AMR_AF=0.06;AFR_AF=0.20;EUR_AF=0.12
-1	695115	rs182473866	A	T	100	PASS	ERATE=0.0208;RSQ=0.2225;THETA=0.0047;AN=2184;VT=SNP;AA=.;AVGPOST=0.6328;SNPSOURCE=LOWCOV;AC=192;LDAF=0.2644;AF=0.09;ASN_AF=0.02;AMR_AF=0.10;AFR_AF=0.15;EUR_AF=0.09
-1	697411	rs199865571	G	GA	40	PASS	AA=.;AC=32;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2184;ASN_AF=0.0035;AVGPOST=0.9731;ERATE=0.0030;EUR_AF=0.02;LDAF=0.0240;RSQ=0.5327;THETA=0.0162;VT=INDEL
-1	701131	rs185335630	A	C	100	PASS	AC=7;ERATE=0.0013;AN=2184;RSQ=0.5398;VT=SNP;AA=.;AVGPOST=0.9930;THETA=0.0091;SNPSOURCE=LOWCOV;LDAF=0.0065;AF=0.0032;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.0013
-1	701779	rs201234755	GAATA	G	217	PASS	AA=.;AC=59;AF=0.03;AFR_AF=0.0020;AMR_AF=0.04;AN=2184;ASN_AF=0.0017;AVGPOST=0.9849;ERATE=0.0007;EUR_AF=0.06;LDAF=0.0303;RSQ=0.8062;THETA=0.0047;VT=INDEL
-1	701835	rs189800799	T	C	100	PASS	AN=2184;AC=37;VT=SNP;AA=.;LDAF=0.0189;THETA=0.0012;AVGPOST=0.9928;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.8610;AF=0.02;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.03
-1	701946	rs149754976	A	G	100	PASS	LDAF=0.7186;THETA=0.0047;AN=2184;ERATE=0.0141;VT=SNP;AA=.;RSQ=0.5135;AVGPOST=0.7212;AC=1739;SNPSOURCE=LOWCOV;AF=0.80;ASN_AF=0.51;AMR_AF=0.84;AFR_AF=0.88;EUR_AF=0.94
-1	704367	rs71507456	T	C	100	PASS	AVGPOST=0.7707;AN=2184;ERATE=0.0088;VT=SNP;AA=.;THETA=0.0055;AC=1887;LDAF=0.7833;SNPSOURCE=LOWCOV;RSQ=0.5129;AF=0.86;ASN_AF=0.67;AMR_AF=0.90;AFR_AF=0.92;EUR_AF=0.95
-1	704637	rs142559957	G	A	100	PASS	THETA=0.0088;ERATE=0.0013;LDAF=0.0487;AN=2184;RSQ=0.7644;AVGPOST=0.9730;AC=84;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.02;AMR_AF=0.10;EUR_AF=0.05
-1	705881	rs116763968	C	T	100	PASS	LDAF=0.0220;AN=2184;THETA=0.0041;VT=SNP;AA=.;AC=33;RSQ=0.7103;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9819;AF=0.02;AMR_AF=0.0028;AFR_AF=0.07
-1	705882	rs72631875	G	A	100	PASS	AVGPOST=0.9903;RSQ=0.8879;AN=2184;VT=SNP;AA=.;THETA=0.0011;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=71;LDAF=0.0360;AF=0.03;ASN_AF=0.0035;AMR_AF=0.06;EUR_AF=0.06
-1	706354	rs143296209	T	G	100	PASS	ERATE=0.0004;AVGPOST=0.9986;AN=2184;LDAF=0.0032;AC=6;VT=SNP;AA=.;THETA=0.0011;RSQ=0.8083;SNPSOURCE=LOWCOV;AF=0.0027;AFR_AF=0.01
-1	706368	rs55727773	A	G	100	PASS	AC=606;THETA=0.0074;AN=2184;ERATE=0.0054;AVGPOST=0.8669;VT=SNP;AA=.;LDAF=0.3039;RSQ=0.7695;SNPSOURCE=LOWCOV;AF=0.28;ASN_AF=0.20;AMR_AF=0.42;AFR_AF=0.04;EUR_AF=0.42
-1	706645	rs148085246	A	C	100	PASS	ERATE=0.0004;AN=2184;RSQ=0.8966;VT=SNP;AA=.;AVGPOST=0.9691;LDAF=0.1133;SNPSOURCE=LOWCOV;THETA=0.0010;AC=238;AF=0.11;ASN_AF=0.17;AMR_AF=0.08;AFR_AF=0.22;EUR_AF=0.0026
-1	707014	rs141817527	A	C	100	PASS	THETA=0.0050;ERATE=0.0005;RSQ=0.8204;AC=18;AN=2184;VT=SNP;AA=.;AVGPOST=0.9956;SNPSOURCE=LOWCOV;LDAF=0.0096;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03
-1	707097	rs182627077	C	T	100	PASS	AN=2184;RSQ=0.9233;VT=SNP;AA=.;AC=5;LDAF=0.0025;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.0023;AFR_AF=0.01
-1	707886	rs115229562	G	C	100	PASS	ERATE=0.0005;AN=2184;VT=SNP;AA=.;AC=68;LDAF=0.0332;SNPSOURCE=LOWCOV;THETA=0.0020;AVGPOST=0.9906;RSQ=0.8878;AF=0.03;ASN_AF=0.0017;AMR_AF=0.04;AFR_AF=0.0020;EUR_AF=0.07
-1	708058	rs140060968	G	A	100	PASS	AN=2184;LDAF=0.0124;THETA=0.0041;VT=SNP;AA=.;RSQ=0.6395;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=19;AVGPOST=0.9887;AF=0.01;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.03
-1	708075	rs142576295	A	G	100	PASS	AC=131;LDAF=0.0693;AN=2184;AVGPOST=0.9677;VT=SNP;AA=.;THETA=0.0033;RSQ=0.7993;ERATE=0.0018;SNPSOURCE=LOWCOV;AF=0.06;ASN_AF=0.17;AMR_AF=0.07;AFR_AF=0.01;EUR_AF=0.0026
-1	710195	rs149744429	A	G	100	PASS	AN=2184;AVGPOST=0.9901;VT=SNP;AA=.;AC=38;LDAF=0.0189;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0006;RSQ=0.8260;AF=0.02;AMR_AF=0.01;AFR_AF=0.07
-1	710332	rs188817121	T	G	100	PASS	THETA=0.0021;AN=2184;VT=SNP;AA=.;RSQ=0.5705;LDAF=0.0014;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;ERATE=0.0007;AF=0.0009;AFR_AF=0.0041
-1	710418	rs145480999	G	A	100	PASS	AN=2184;RSQ=0.7623;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AVGPOST=0.9955;AC=11;ERATE=0.0006;THETA=0.0064;LDAF=0.0069;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02
-1	712515	rs202126417	T	TC	94	PASS	AA=TC;AC=45;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2184;ASN_AF=0.0017;AVGPOST=0.9753;ERATE=0.0030;LDAF=0.0278;RSQ=0.6781;THETA=0.0109;VT=INDEL
-1	712583	rs142048655	T	C	100	PASS	THETA=0.0111;AN=2184;VT=SNP;AA=.;AVGPOST=0.9998;RSQ=0.7933;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013
-1	712871	rs4311830	T	C	100	PASS	AC=73;AN=2184;VT=SNP;AA=.;THETA=0.0017;SNPSOURCE=LOWCOV;RSQ=0.7909;ERATE=0.0007;LDAF=0.0362;AVGPOST=0.9787;AF=0.03;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.08;EUR_AF=0.01
-1	712930	rs28457007	T	C	100	PASS	ERATE=0.0004;AVGPOST=0.9902;AN=2184;LDAF=0.0186;VT=SNP;AA=.;RSQ=0.8130;SNPSOURCE=LOWCOV;AC=36;THETA=0.0010;AF=0.02;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.03
-1	712991	rs192262181	G	C	100	PASS	AN=2184;VT=SNP;AA=.;LDAF=0.0059;ERATE=0.0019;THETA=0.0037;AVGPOST=0.9916;SNPSOURCE=LOWCOV;AC=4;RSQ=0.3783;AF=0.0018;AMR_AF=0.01;AFR_AF=0.0041
-1	713092	rs4565649	G	A	100	PASS	ERATE=0.0004;AN=2184;RSQ=0.9493;VT=SNP;AA=.;AC=59;SNPSOURCE=LOWCOV;THETA=0.0029;AVGPOST=0.9961;LDAF=0.0277;AF=0.03;AMR_AF=0.02;AFR_AF=0.11;EUR_AF=0.0013
-1	713111	rs138300141	C	T	100	PASS	ERATE=0.0005;RSQ=0.4288;AN=2184;LDAF=0.0010;VT=SNP;AA=.;THETA=0.0030;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017
-1	713131	rs200310424	A	AT	157	PASS	AA=A;AC=38;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2184;AVGPOST=0.9928;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0191;RSQ=0.8585;THETA=0.0014;VT=INDEL
-1	713158	rs183634591	T	A	100	PASS	ERATE=0.0005;RSQ=0.9018;AN=2184;VT=SNP;AA=.;AC=24;THETA=0.0104;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.0114;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013
-1	713189	rs187454950	G	A	100	PASS	AN=2184;RSQ=0.6996;VT=SNP;AA=.;AC=10;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.0065;THETA=0.0016;AVGPOST=0.9958;AF=0.0046;AFR_AF=0.02
-1	713190	rs191899145	G	A	100	PASS	LDAF=0.0053;THETA=0.0015;RSQ=0.8268;AN=2184;VT=SNP;AA=.;AC=10;AVGPOST=0.9980;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0046;AFR_AF=0.02
-1	713250	rs149143617	G	C	100	PASS	AN=2184;VT=SNP;AA=.;THETA=0.0017;RSQ=0.9754;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=25;LDAF=0.0115;AVGPOST=0.9992;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013
-1	713337	rs184249808	G	A	100	PASS	ERATE=0.0005;RSQ=0.6269;AN=2184;VT=SNP;AA=.;AVGPOST=0.9969;LDAF=0.0038;THETA=0.0037;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01
-1	713977	rs74512038	C	T	100	PASS	ERATE=0.0004;AN=2184;VT=SNP;AA=.;AC=155;THETA=0.0019;AVGPOST=0.9916;SNPSOURCE=LOWCOV;LDAF=0.0723;RSQ=0.9544;AF=0.07;ASN_AF=0.22;AMR_AF=0.07;AFR_AF=0.01;EUR_AF=0.0040
-1	713979	rs117217250	C	G	100	PASS	ERATE=0.0004;AVGPOST=0.9977;AN=2184;RSQ=0.5843;VT=SNP;AA=.;THETA=0.0046;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.01
-1	714002	rs143219077	C	G	100	PASS	AC=17;LDAF=0.0095;AN=2184;VT=SNP;AA=.;AVGPOST=0.9930;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.0034;RSQ=0.6851;AF=0.01;ASN_AF=0.02;AFR_AF=0.0041;EUR_AF=0.0013
-1	714019	rs114983708	A	G	100	PASS	AC=257;ERATE=0.0013;AN=2184;THETA=0.0038;LDAF=0.1171;VT=SNP;AA=.;RSQ=0.9494;SNPSOURCE=LOWCOV;AVGPOST=0.9830;AF=0.12;ASN_AF=0.04;AMR_AF=0.05;AFR_AF=0.37;EUR_AF=0.04
-1	714031	rs138896432	G	A	100	PASS	ERATE=0.0004;THETA=0.0044;RSQ=0.6753;AN=2184;AVGPOST=0.9990;VT=SNP;AA=.;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0035
-1	714189	rs186983562	A	G	100	PASS	LDAF=0.0067;AVGPOST=0.9943;AN=2184;VT=SNP;AA=.;AC=10;RSQ=0.6623;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0007;AF=0.0046;AFR_AF=0.02
-1	714277	rs138660747	C	A	100	PASS	THETA=0.0014;AN=2184;RSQ=0.5096;VT=SNP;AA=.;LDAF=0.0019;AVGPOST=0.9980;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026
-1	714310	rs141232927	C	G	100	PASS	ERATE=0.0004;AN=2184;VT=SNP;AA=.;THETA=0.0028;RSQ=0.6634;SNPSOURCE=LOWCOV;LDAF=0.0111;AC=19;AVGPOST=0.9892;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02
-1	714427	rs12028261	G	A	100	PASS	AN=2184;THETA=0.0040;VT=SNP;AA=.;ERATE=0.0035;AC=1753;AVGPOST=0.9238;LDAF=0.7973;SNPSOURCE=LOWCOV;RSQ=0.8340;AF=0.80;ASN_AF=0.79;AMR_AF=0.88;AFR_AF=0.49;EUR_AF=0.98
-1	714439	rs139182182	G	A	100	PASS	ERATE=0.0005;LDAF=0.0666;AN=2184;THETA=0.0031;VT=SNP;AA=.;AC=137;AVGPOST=0.9815;SNPSOURCE=LOWCOV;RSQ=0.8830;AF=0.06;ASN_AF=0.17;AMR_AF=0.07;AFR_AF=0.02;EUR_AF=0.0040
-1	714596	rs149887893	T	C	100	PASS	RSQ=0.8983;AN=2184;AVGPOST=0.9924;AC=57;ERATE=0.0009;THETA=0.0008;VT=SNP;AA=.;LDAF=0.0269;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.04;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.03
-1	714622	rs117741916	G	C	100	PASS	ERATE=0.0004;AVGPOST=0.9994;AN=2184;THETA=0.0031;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=25;RSQ=0.9801;LDAF=0.0115;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013
-1	714646	rs201299403	TTTGAAAC	T	192	PASS	AA=.;AC=25;AF=0.01;AN=2184;ASN_AF=0.04;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0113;RSQ=0.9626;THETA=0.0010;VT=INDEL
-1	714760	rs192352919	G	C	100	PASS	AVGPOST=0.9985;THETA=0.0015;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4279;ERATE=0.0006;LDAF=0.0012;AF=0.0005;EUR_AF=0.0013
-1	715074	rs11804379	A	G	100	PASS	ERATE=0.0005;AN=2184;THETA=0.0005;VT=SNP;AA=.;AVGPOST=0.9971;SNPSOURCE=LOWCOV;RSQ=0.9427;AC=42;LDAF=0.0198;AF=0.02;AFR_AF=0.09
-1	715106	rs140451601	A	C	100	PASS	AN=2184;AVGPOST=0.9997;VT=SNP;AA=.;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0010;ERATE=0.0003;RSQ=0.7921;AF=0.0005;ASN_AF=0.0017
-1	715140	rs142907433	G	C	100	PASS	ERATE=0.0004;RSQ=0.9772;AN=2184;LDAF=0.0117;VT=SNP;AA=.;AVGPOST=0.9993;SNPSOURCE=LOWCOV;THETA=0.0020;AC=25;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013
-1	715142	rs151120166	G	T	100	PASS	ERATE=0.0004;AN=2184;VT=SNP;AA=.;LDAF=0.0119;RSQ=0.9611;THETA=0.0025;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=25;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013
-1	715205	rs141090730	C	G	100	PASS	ERATE=0.0004;RSQ=0.9843;AN=2184;LDAF=0.0324;VT=SNP;AA=.;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0052;AC=71;AF=0.03;AMR_AF=0.02;AFR_AF=0.13;EUR_AF=0.0013
-1	715211	rs184426933	C	G	100	PASS	ERATE=0.0005;AN=2184;VT=SNP;AA=.;THETA=0.0011;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4659;AF=0.0005;EUR_AF=0.0013
-1	715265	rs12184267	C	T	100	PASS	THETA=0.0015;LDAF=0.0240;AN=2184;RSQ=0.9168;VT=SNP;AA=.;AC=51;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9950;AF=0.02;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.04
-1	715271	rs78390460	G	C	100	PASS	AC=12;AN=2184;AVGPOST=0.9990;VT=SNP;AA=.;THETA=0.0027;LDAF=0.0059;RSQ=0.9221;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;AFR_AF=0.02
-1	715348	rs3131984	T	G	100	PASS	LDAF=0.9987;AN=2184;THETA=0.0031;VT=SNP;AA=.;AC=2184;SNPSOURCE=LOWCOV;RSQ=0.1317;ERATE=0.0006;AVGPOST=0.9974;AF=1.00;ASN_AF=1.00;AMR_AF=1.00;AFR_AF=1.00;EUR_AF=1.00
-1	715367	rs12184277	A	G	100	PASS	THETA=0.0015;RSQ=0.9213;AN=2184;AC=49;VT=SNP;AA=.;AVGPOST=0.9954;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0224;AF=0.02;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.04
-1	715517	rs138194918	G	C	100	PASS	ERATE=0.0005;LDAF=0.0120;AN=2184;VT=SNP;AA=.;RSQ=0.9606;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0043;AC=25;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013
-1	715722	rs190569140	G	A	100	PASS	ERATE=0.0005;AVGPOST=0.9985;LDAF=0.0013;AN=2184;VT=SNP;AA=.;THETA=0.0011;SNPSOURCE=LOWCOV;RSQ=0.5402;AC=2;AF=0.0009;ASN_AF=0.0035
-1	716041	rs149301622	G	A	100	PASS	THETA=0.0021;ERATE=0.0004;AC=48;AN=2184;VT=SNP;AA=.;RSQ=0.9200;LDAF=0.0223;AVGPOST=0.9954;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.04
-1	716131	rs148067420	C	T	100	PASS	RSQ=0.6732;AVGPOST=0.9927;AN=2184;LDAF=0.0093;AC=16;VT=SNP;AA=.;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.01;ASN_AF=0.02;EUR_AF=0.0040
-1	716241	rs116632831	T	C	100	PASS	ERATE=0.0004;RSQ=0.8624;AN=2184;VT=SNP;AA=.;AC=10;SNPSOURCE=LOWCOV;THETA=0.0020;AVGPOST=0.9984;LDAF=0.0050;AF=0.0046;AFR_AF=0.02
-1	716838	rs182291373	T	C	100	PASS	THETA=0.0009;ERATE=0.0004;AN=2184;AVGPOST=0.9967;VT=SNP;AA=.;LDAF=0.0029;SNPSOURCE=LOWCOV;AC=4;RSQ=0.5236;AF=0.0018;ASN_AF=0.01;EUR_AF=0.0013
-1	717474	rs141784362	C	T	100	PASS	AN=2184;RSQ=0.9088;LDAF=0.0324;VT=SNP;AA=.;AC=67;THETA=0.0011;AVGPOST=0.9922;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.03;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.11;EUR_AF=0.0013
-1	717485	rs12184279	C	A	100	PASS	ERATE=0.0005;THETA=0.0014;AVGPOST=0.9946;AN=2184;AC=46;VT=SNP;AA=.;RSQ=0.9028;SNPSOURCE=LOWCOV;LDAF=0.0213;AF=0.02;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.04
-1	717486	rs140304290	G	A	100	PASS	LDAF=0.0021;AVGPOST=0.9966;AN=2184;THETA=0.0040;RSQ=0.3899;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;ASN_AF=0.0017
-1	717587	rs144155419	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9966;AN=2184;VT=SNP;AA=.;AC=14;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.8245;LDAF=0.0080;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.01
-1	717627	rs147384991	C	G	100	PASS	ERATE=0.0005;AN=2184;RSQ=0.9203;VT=SNP;AA=.;AC=34;LDAF=0.0162;AVGPOST=0.9964;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.02;AMR_AF=0.01;AFR_AF=0.06
-1	718284	rs184458587	C	T	100	PASS	ERATE=0.0005;AN=2184;VT=SNP;AA=.;THETA=0.0006;AVGPOST=0.9823;SNPSOURCE=LOWCOV;AC=21;RSQ=0.5709;LDAF=0.0144;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01
-1	718336	rs188996809	T	C	100	PASS	ERATE=0.0004;AN=2184;AVGPOST=0.9981;VT=SNP;AA=.;THETA=0.0028;LDAF=0.0022;RSQ=0.6163;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026
-1	718505	rs181440659	G	A	100	PASS	LDAF=0.0123;AN=2184;RSQ=0.6073;AC=16;VT=SNP;AA=.;THETA=0.0057;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9882;AF=0.01;AMR_AF=0.01;EUR_AF=0.02
-1	718555	rs10751453	T	C	100	PASS	RSQ=0.3711;AC=2169;AN=2184;AVGPOST=0.9713;VT=SNP;AA=.;THETA=0.0018;LDAF=0.9817;ERATE=0.0048;SNPSOURCE=LOWCOV;AF=0.99;ASN_AF=1.00;AMR_AF=0.99;AFR_AF=0.99;EUR_AF=1.00
-1	718638	rs185487076	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9986;AN=2184;RSQ=0.7525;VT=SNP;AA=.;THETA=0.0017;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01
-1	719484	rs189950152	A	G	100	PASS	ERATE=0.0004;AN=2184;VT=SNP;AA=.;THETA=0.0006;AC=0;RSQ=0.2640;SNPSOURCE=LOWCOV;AVGPOST=0.9987;LDAF=0.0008;AF=0
-1	719489	rs201939756	C	CATAAT	469	PASS	AA=.;AC=166;AF=0.08;AFR_AF=0.28;AMR_AF=0.04;AN=2184;ASN_AF=0.01;AVGPOST=0.9569;ERATE=0.0037;EUR_AF=0.01;LDAF=0.0808;RSQ=0.8249;THETA=0.0010;VT=INDEL
-1	719511	rs181042612	A	G	100	PASS	THETA=0.0014;AN=2184;LDAF=0.0117;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AVGPOST=0.9968;RSQ=0.8970;AC=25;ERATE=0.0007;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013
-1	719604	rs186078657	T	C	100	PASS	AC=7;LDAF=0.0053;AN=2184;VT=SNP;AA=.;RSQ=0.5887;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9951;AF=0.0032;AMR_AF=0.01;EUR_AF=0.01
-1	719643	rs192061759	A	G	100	PASS	ERATE=0.0004;AVGPOST=0.9994;AN=2184;THETA=0.0005;VT=SNP;AA=.;RSQ=0.6730;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017
-1	719809	rs184004884	T	C	100	PASS	ERATE=0.0004;LDAF=0.0009;THETA=0.0014;AN=2184;RSQ=0.5341;VT=SNP;AA=.;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028
-1	719854	rs200512186	CAG	C	120	PASS	AA=CAG;AC=9;AF=0.0041;AMR_AF=0.0028;AN=2184;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0055;RSQ=0.7795;THETA=0.0029;VT=INDEL
-1	719873	rs114149602	G	T	100	PASS	AN=2184;VT=SNP;AA=.;AVGPOST=0.9989;THETA=0.0019;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;RSQ=0.6622;AF=0.0009;AFR_AF=0.0041
-1	719914	rs187772768	C	G	100	PASS	ERATE=0.0004;THETA=0.0039;AC=52;AN=2184;LDAF=0.0239;VT=SNP;AA=.;RSQ=0.9477;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AF=0.02;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.04
-1	720134	rs190637783	G	A	100	PASS	ERATE=0.0005;RSQ=0.4411;AVGPOST=0.9985;THETA=0.0022;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0012;AF=0.0005;AMR_AF=0.0028
-1	720223	rs149231255	G	A	100	PASS	ERATE=0.0004;LDAF=0.0116;AN=2184;RSQ=0.9729;VT=SNP;AA=.;THETA=0.0018;SNPSOURCE=LOWCOV;AC=25;AVGPOST=0.9992;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013
-1	720240	rs3121393	T	C	100	PASS	THETA=0.0015;AN=2184;VT=SNP;AA=.;RSQ=0.9143;AC=2021;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9832;LDAF=0.9212;AF=0.93;ASN_AF=0.81;AMR_AF=0.93;AFR_AF=0.95;EUR_AF=0.99
-1	720381	rs116801199	G	T	100	PASS	ERATE=0.0005;AC=73;AN=2184;VT=SNP;AA=.;RSQ=0.9379;AVGPOST=0.9938;SNPSOURCE=LOWCOV;THETA=0.0036;LDAF=0.0338;AF=0.03;ASN_AF=0.04;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.04
-1	720416	rs182878777	A	T	100	PASS	THETA=0.0032;AN=2184;AVGPOST=0.9996;VT=SNP;AA=.;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7354;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013
-1	720468	rs187315357	G	A	100	PASS	RSQ=0.4812;AN=2184;AVGPOST=0.9962;LDAF=0.0032;VT=SNP;AA=.;THETA=0.0028;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026
-1	720681	rs192903943	T	C	100	PASS	ERATE=0.0004;AN=2184;LDAF=0.0043;VT=SNP;AA=.;RSQ=0.7666;AC=9;THETA=0.0012;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.0041;AFR_AF=0.02
-1	720797	rs75530702	G	A	100	PASS	RSQ=0.9089;THETA=0.0022;AN=2184;VT=SNP;AA=.;AC=2027;ERATE=0.0018;SNPSOURCE=LOWCOV;AVGPOST=0.9828;LDAF=0.9224;AF=0.93;ASN_AF=0.82;AMR_AF=0.93;AFR_AF=0.95;EUR_AF=1.00
-1	720968	rs184456771	G	C	100	PASS	ERATE=0.0004;AN=2184;AC=6;VT=SNP;AA=.;THETA=0.0011;AVGPOST=0.9971;LDAF=0.0038;RSQ=0.6797;SNPSOURCE=LOWCOV;AF=0.0027;AFR_AF=0.01
-1	721006	rs187802448	A	G	100	PASS	AN=2184;RSQ=0.5588;VT=SNP;AA=.;AC=10;AVGPOST=0.9919;THETA=0.0017;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0080;AF=0.0046;ASN_AF=0.02
-1	721104	rs201616474	TA	T	80	PASS	AA=TA;AC=66;AF=0.03;AFR_AF=0.03;AMR_AF=0.02;AN=2184;ASN_AF=0.03;AVGPOST=0.9868;ERATE=0.0031;EUR_AF=0.03;LDAF=0.0323;RSQ=0.8470;THETA=0.0016;VT=INDEL
-1	721119	rs115019173	C	T	100	PASS	LDAF=0.0092;AN=2184;AC=20;THETA=0.0005;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.9743;AF=0.01;AMR_AF=0.01;AFR_AF=0.04
-1	721237	rs192191435	T	A	100	PASS	ERATE=0.0004;THETA=0.0015;AN=2184;AVGPOST=0.9990;VT=SNP;AA=.;LDAF=0.0019;RSQ=0.7652;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.01
-1	721243	rs184778694	A	G	100	PASS	AN=2184;VT=SNP;AA=.;RSQ=0.6929;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013
-1	721290	rs12565286	G	C	100	PASS	AN=2184;RSQ=0.9811;LDAF=0.0352;VT=SNP;AA=.;AC=76;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9982;AF=0.03;ASN_AF=0.04;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.04
-1	721705	rs151072073	A	G	100	PASS	ERATE=0.0004;AN=2184;LDAF=0.0199;VT=SNP;AA=.;RSQ=0.8558;THETA=0.0019;SNPSOURCE=LOWCOV;AVGPOST=0.9920;AC=39;AF=0.02;AMR_AF=0.01;AFR_AF=0.08
-1	721757	rs189147642	T	A	100	PASS	ERATE=0.0004;AN=2184;AVGPOST=0.9975;VT=SNP;AA=.;AC=51;LDAF=0.0238;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9610;AF=0.02;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.04
-1	722361	rs181577596	A	G	100	PASS	LDAF=0.0027;AN=2184;RSQ=0.4393;VT=SNP;AA=.;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.0010;AC=2;AVGPOST=0.9965;AF=0.0009;ASN_AF=0.0017;AFR_AF=0.0020
-1	722519	rs140978157	A	G	100	PASS	ERATE=0.0004;AN=2184;LDAF=0.0032;AC=6;VT=SNP;AA=.;RSQ=0.8810;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.0036;AF=0.0027;AFR_AF=0.01
-1	722559	rs150361918	T	C	100	PASS	AN=2184;LDAF=0.0385;AC=83;VT=SNP;AA=.;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.0010;RSQ=0.9738;AVGPOST=0.9978;AF=0.04;AMR_AF=0.02;AFR_AF=0.15;EUR_AF=0.0013
-1	722603	rs138029171	T	C	100	PASS	THETA=0.0014;AC=48;LDAF=0.0240;AN=2184;VT=SNP;AA=.;AVGPOST=0.9908;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.8482;AF=0.02;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.08;EUR_AF=0.0013
-1	722670	rs116030099	T	C	100	PASS	AC=120;THETA=0.0014;AN=2184;LDAF=0.0637;VT=SNP;AA=.;RSQ=0.8222;AVGPOST=0.9721;ERATE=0.0038;SNPSOURCE=LOWCOV;AF=0.05;AMR_AF=0.10;AFR_AF=0.01;EUR_AF=0.10
-1	722672	rs143583930	C	T	100	PASS	LDAF=0.0285;AN=2184;RSQ=0.8860;AC=65;VT=SNP;AA=.;SNPSOURCE=LOWCOV;THETA=0.0043;ERATE=0.0006;AVGPOST=0.9910;AF=0.03;ASN_AF=0.04;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.03
-1	722711	rs184304920	A	C	100	PASS	ERATE=0.0005;AVGPOST=0.9994;AN=2184;RSQ=0.8141;LDAF=0.0015;VT=SNP;AA=.;THETA=0.0011;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01
-1	722980	rs114222710	C	T	100	PASS	ERATE=0.0004;THETA=0.0026;RSQ=0.9871;AN=2184;AVGPOST=0.9990;VT=SNP;AA=.;LDAF=0.0326;SNPSOURCE=LOWCOV;AC=71;AF=0.03;AMR_AF=0.02;AFR_AF=0.13;EUR_AF=0.0013
-1	722981	rs146158714	G	A	100	PASS	THETA=0.0021;ERATE=0.0005;AN=2184;VT=SNP;AA=.;RSQ=0.9199;AVGPOST=0.9989;LDAF=0.0056;SNPSOURCE=LOWCOV;AC=11;AF=0.01;AFR_AF=0.02
-1	723307	rs28659788	C	G	100	PASS	ERATE=0.0005;LDAF=0.0328;AN=2184;RSQ=0.9424;AVGPOST=0.9947;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=69;THETA=0.0024;AF=0.03;ASN_AF=0.04;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.04
-1	723329	rs189787166	A	T	100	PASS	ERATE=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;AA=.;RSQ=0.7048;LDAF=0.0007;THETA=0.0025;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.0020
-1	723379	rs181223789	T	A	100	PASS	AN=2184;VT=SNP;AA=.;AVGPOST=0.9989;THETA=0.0012;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.6424;AC=2;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013
-1	723738	rs59776264	ACT	A	223	PASS	AA=.;AC=74;AF=0.03;AFR_AF=0.13;AMR_AF=0.02;AN=2184;AVGPOST=0.9973;ERATE=0.0004;LDAF=0.0338;RSQ=0.9746;THETA=0.0007;VT=INDEL
-1	723741	rs200325929	CTG	C	97	PASS	AA=.;AC=73;AF=0.03;AFR_AF=0.13;AMR_AF=0.02;AN=2184;AVGPOST=0.9971;ERATE=0.0004;LDAF=0.0333;RSQ=0.9724;THETA=0.0012;VT=INDEL
-1	723742	rs28375378	T	C	100	PASS	ERATE=0.0005;RSQ=0.9190;AN=2184;THETA=0.0031;VT=SNP;AA=.;LDAF=0.0303;SNPSOURCE=LOWCOV;AC=69;AVGPOST=0.9926;AF=0.03;ASN_AF=0.04;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.04
-1	723819	rs11804171	T	A	100	PASS	RSQ=0.9858;AN=2184;LDAF=0.1202;AC=262;VT=SNP;AA=.;THETA=0.0006;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9955;AF=0.12;ASN_AF=0.04;AMR_AF=0.06;AFR_AF=0.37;EUR_AF=0.04
-1	723891	rs2977670	G	C	100	PASS	THETA=0.0009;LDAF=0.7873;AN=2184;RSQ=0.9857;VT=SNP;AA=.;AVGPOST=0.9930;AC=1720;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.79;ASN_AF=0.78;AMR_AF=0.86;AFR_AF=0.50;EUR_AF=0.95
-1	723918	rs144434834	G	A	100	PASS	ERATE=0.0004;RSQ=0.9840;AN=2184;VT=SNP;AA=.;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0010;AC=71;LDAF=0.0327;AF=0.03;AMR_AF=0.02;AFR_AF=0.13;EUR_AF=0.0013
-1	724103	rs111533735	A	G	100	PASS	ERATE=0.0005;RSQ=0.9859;THETA=0.0061;AN=2184;VT=SNP;AA=.;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.0341;AC=74;AF=0.03;AMR_AF=0.02;AFR_AF=0.13
-1	726449	rs145488171	T	C	100	PASS	ERATE=0.0004;AN=2184;AVGPOST=0.9990;VT=SNP;AA=.;LDAF=0.0119;THETA=0.0028;SNPSOURCE=LOWCOV;AC=25;RSQ=0.9763;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013
-1	726794	rs28454925	C	G	100	PASS	ERATE=0.0023;AN=2184;LDAF=0.0286;VT=SNP;AA=.;AC=56;SNPSOURCE=LOWCOV;THETA=0.0013;RSQ=0.8891;AVGPOST=0.9925;AF=0.03;AMR_AF=0.03;AFR_AF=0.03;EUR_AF=0.04
-1	727142	rs28641938	T	C	100	PASS	ERATE=0.0004;AN=2184;VT=SNP;AA=.;AVGPOST=0.9980;THETA=0.0059;SNPSOURCE=LOWCOV;AC=53;RSQ=0.9652;LDAF=0.0248;AF=0.02;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.04
-1	727212	rs186100254	G	A	100	PASS	AN=2184;LDAF=0.0105;RSQ=0.5746;VT=SNP;AA=.;AC=14;ERATE=0.0016;SNPSOURCE=LOWCOV;THETA=0.0016;AVGPOST=0.9885;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01
-1	727655	rs12565110	C	T	100	PASS	THETA=0.0015;AVGPOST=0.9902;AN=2184;VT=SNP;AA=.;LDAF=0.0734;AC=156;SNPSOURCE=LOWCOV;RSQ=0.9485;ERATE=0.0006;AF=0.07;ASN_AF=0.18;AMR_AF=0.07;AFR_AF=0.05;EUR_AF=0.0026
-1	727841	rs116587930	G	A	100	PASS	ERATE=0.0004;AN=2184;AC=49;VT=SNP;AA=.;THETA=0.0030;LDAF=0.0223;SNPSOURCE=LOWCOV;RSQ=0.9658;AVGPOST=0.9982;AF=0.02;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.06
-1	728088	rs201276269	ACT	A	70	PASS	AA=ACT;AC=66;AF=0.03;AFR_AF=0.05;AMR_AF=0.03;AN=2184;ASN_AF=0.03;AVGPOST=0.9094;ERATE=0.0165;EUR_AF=0.01;LDAF=0.0712;RSQ=0.4139;THETA=0.0012;VT=INDEL
-1	728159	rs3131978	C	T	100	PASS	AC=1995;THETA=0.0032;AVGPOST=0.9390;AN=2184;VT=SNP;AA=.;LDAF=0.8943;ERATE=0.0059;RSQ=0.7769;SNPSOURCE=LOWCOV;AF=0.91;ASN_AF=0.78;AMR_AF=0.92;AFR_AF=0.94;EUR_AF=0.99
-1	728242	rs3131977	C	G	100	PASS	THETA=0.0015;AN=2184;RSQ=0.8511;VT=SNP;AA=.;ERATE=0.0017;AVGPOST=0.9647;LDAF=0.9074;SNPSOURCE=LOWCOV;AC=2005;AF=0.92;ASN_AF=0.80;AMR_AF=0.92;AFR_AF=0.93;EUR_AF=1.00
-1	728606	rs145605014	G	A	100	PASS	AN=2184;AC=8;RSQ=0.9605;AVGPOST=0.9997;VT=SNP;AA=.;LDAF=0.0038;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.0037;AFR_AF=0.02
-1	728853	rs191103318	A	G	100	PASS	ERATE=0.0004;AN=2184;VT=SNP;AA=.;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;RSQ=0.4944;AVGPOST=0.9992;AF=0.0005;ASN_AF=0.0017
-1	728951	rs55744711	C	T	100	PASS	AC=73;AN=2184;RSQ=0.9879;AVGPOST=0.9990;VT=SNP;AA=.;THETA=0.0006;LDAF=0.0333;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.03;AMR_AF=0.02;AFR_AF=0.13
-1	729358	rs142251181	GA	G	119	PASS	AA=GA;AC=24;AF=0.01;AN=2184;ASN_AF=0.04;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0122;RSQ=0.9290;THETA=0.0086;VT=INDEL
-1	729632	rs116720794	C	T	100	PASS	ERATE=0.0004;LDAF=0.0246;RSQ=0.9316;AC=52;AN=2184;VT=SNP;AA=.;THETA=0.0018;SNPSOURCE=LOWCOV;AVGPOST=0.9958;AF=0.02;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.04
-1	729679	rs4951859	C	G	100	PASS	LDAF=0.6596;RSQ=0.9300;AN=2184;AC=1440;ERATE=0.0009;VT=SNP;AA=.;SNPSOURCE=LOWCOV;THETA=0.0010;AVGPOST=0.9514;AF=0.66;ASN_AF=0.65;AMR_AF=0.77;AFR_AF=0.31;EUR_AF=0.83
-1	729739	rs148932570	C	T	100	PASS	ERATE=0.0004;RSQ=0.6965;AN=2184;VT=SNP;AA=.;THETA=0.0017;LDAF=0.0020;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=3;AF=0.0014;ASN_AF=0.01