File Changes for braney

v409_preview to v409_preview2 (2021-01-04 to 2021-01-11) v409

• src/hg/htdocs/goldenPath/help/mirror.html
  • lines changed 30, context: html, text, full: html, text
    13e3653211b86d6f90e02b385f5008fc69ccd0a1 Fri Jan 8 12:44:33 2021 -0800
    changes to mirror HTML from TXT file changes
• src/hg/htdocs/goldenPath/help/mirrorManual.html
  • lines changed 132, context: html, text, full: html, text
    13e3653211b86d6f90e02b385f5008fc69ccd0a1 Fri Jan 8 12:44:33 2021 -0800
    changes to mirror HTML from TXT file changes
• src/hg/lib/clinvarSubLolly.as
  • lines changed 1, context: html, text, full: html, text
    6556efb9aa9508359f3344e26ae3ad7d9d9b6cf3 Tue Jan 5 12:44:32 2021 -0800
    document what score means in clinvarSubLolly bigBed
  • lines changed 1, context: html, text, full: html, text
    a87b28fa247665d863bfcd5013e5dc929892ec81 Tue Jan 5 12:46:20 2021 -0800
    document what score means in clinvarSubLolly bigBed
• src/hg/lib/hgMaf.c
  • lines changed 26, context: html, text, full: html, text
    da6e1451531ba0147ba54f531361515e55fde9af Mon Jan 4 16:30:19 2021 -0800
    hack to hgMaf to allow for the presence of organism names with a dot in them.
• src/hg/makeDb/doc/wuhCor1/multiz7way.txt
  • lines changed 5, context: html, text, full: html, text
    bcf2b16db40f74e7d0d0e68a8cfbdffb4f900add Tue Jan 5 16:08:13 2021 -0800
    some work on improving the mafSnp display with Jim #26766
• src/hg/makeDb/hgLoadMaf/hgLoadMafSummary.c
  • lines changed 29, context: html, text, full: html, text
    a65c1c83911f15e20ca817725d4bd3681c8c784e Wed Jan 6 17:16:12 2021 -0800
    deal with the fact that some assemblies may have a single dot in their name
• src/hg/utils/mafToBigMaf/mafToBigMaf.c
  • lines changed 11, context: html, text, full: html, text
    c26a1d576fadc122a2b907b25d72935f4428ad22 Wed Jan 6 11:17:58 2021 -0800
    look for a dot in organism names if we're not finding the name without the dot
• src/hg/utils/otto/clinvar/clinvar.as
  • lines changed 4, context: html, text, full: html, text
    33bf30695c6b2c759957430de65f1e276ccee112 Thu Jan 7 10:54:35 2021 -0800
    make clinvar.as the same in the tree as it is in production
• src/product/mirrorManual.txt
  • lines changed 44, context: html, text, full: html, text
    e9c4b9a1ad6de5a908b24f6b04087e8d22bd87b2 Wed Jan 6 12:26:59 2021 -0800
    add instructions about using the FreeType font engine
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    4bc49c2c3d7be3392080b5ed6b815b6362293b31 Mon Jan 11 10:04:22 2021 -0800
    v409 preview2