03045b074b65d33e4893d9b4b2b464271f659a69 chmalee Fri Jan 8 14:43:10 2021 -0800 Forgot the cds and fa arguments to pslToBigPsl for lrg otto build, refs #24672 diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra index a8e70e9..1374ab8 100644 --- src/hg/makeDb/trackDb/human/trackDb.ra +++ src/hg/makeDb/trackDb/human/trackDb.ra @@ -3166,37 +3166,33 @@ url2Label miRBase: #url2 http://microrna.sanger.ac.uk/cgi-bin/sequences/mirna_entry.pl?id=$$ url2 http://www.mirbase.org/cgi-bin/query.pl?terms=$$ dataVersion miRBase Release 13.0 (March 2009) and snoRNABase Version 3 track lrgBigPsl shortLabel LRG Transcripts longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations group genes visibility hide type bigPsl mouseOverField mouseOver skipFields mouseOver skipEmptyFields on urls ncbiTranscript=https://www.ncbi.nlm.nih.gov/nuccore/$$ ensemblTranscript=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$ ncbiProtein=https://www.ncbi.nlm.nih.gov/protein/$$ ensemblProtein=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$ -cdsTable lrgCds -cdnaTable lrgCdna -pepTable lrgPep altColor 127,127,127 baseColorDefault genomicCodons baseColorUseSequence lfExtra -baseColorUseCds table lrgCds indelDoubleInsert on indelPolyA on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 color 54,125,29 urlLabel Link to LRG transcript: url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor bigDataUrl /gbdb/$D/bbi/lrgBigPsl.bb release alpha track lrgTranscriptAli shortLabel LRG Transcripts