e101dc0e743a44ea8c8813ffcc29e8cc51697f40
chmalee
  Fri Jan 8 13:05:26 2021 -0800
LRG track otto updating for hg19 and hg38, refs #17877 #24672

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 5456fb5..5173828 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -3158,79 +3158,81 @@
 shortLabel sno/miRNA
 longLabel C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase
 group genes
 visibility hide
 color 200,80,0
 type bed 8 +
 noScoreFilter .
 urlLabel Laboratoire de Biologie Moleculaire Eucaryote:
 url http://www-snorna.biotoul.fr/plus.php?id=$$
 url2Label miRBase:
 #url2 http://microrna.sanger.ac.uk/cgi-bin/sequences/mirna_entry.pl?id=$$
 url2 http://www.mirbase.org/cgi-bin/query.pl?terms=$$
 dataVersion miRBase Release 13.0 (March 2009) and snoRNABase Version 3
 
 track lrgBigPsl
-shortLabel LRG Transcripts (RM 24672)
-longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations (RedMine 24672)
+shortLabel LRG Transcripts
+longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations
 group genes
 visibility hide
 type bigPsl
 mouseOverField mouseOver
 skipFields mouseOver
 skipEmptyFields on
 urls ncbiTranscript=https://www.ncbi.nlm.nih.gov/nuccore/$$ ensemblTranscript=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$ ncbiProtein=https://www.ncbi.nlm.nih.gov/protein/$$ ensemblProtein=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$
 cdsTable lrgCds
 cdnaTable lrgCdna
 pepTable lrgPep
 altColor 127,127,127
 baseColorDefault genomicCodons
 baseColorUseSequence lfExtra
 baseColorUseCds table lrgCds
 indelDoubleInsert on
 indelPolyA on
 indelQueryInsert on
 showDiffBasesAllScales .
 showDiffBasesMaxZoom 10000.0
 showCdsAllScales .
 showCdsMaxZoom 10000.0
 color 54,125,29
 urlLabel Link to LRG transcript:
 url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor
 bigDataUrl /gbdb/$D/bbi/lrgBigPsl.bb
+release alpha
 
 track lrgTranscriptAli
 shortLabel LRG Transcripts
 longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations
 group genes
 visibility hide
 type psl .
 cdsTable lrgCds
 cdnaTable lrgCdna
 pepTable lrgPep
 baseColorDefault diffCodons
 baseColorUseCds table lrgCds
 baseColorUseSequence table lrgCdna
 indelDoubleInsert on
 indelQueryInsert on
 showDiffBasesAllScales .
 showDiffBasesMaxZoom 10000.0
 showCdsAllScales .
 showCdsMaxZoom 10000.0
 color 54,125,29
 urlLabel Link to LRG transcript:
 url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor
+release beta,public
 
 track affyHuEx1
 shortLabel Affy HuEx 1.0
 longLabel Affymetrix Human Exon 1.0 Probe Sets
 group expression
 visibility hide
 url http://www.affymetrix.com/analysis/netaffx/exon/probe_set.affx?pk=1:$$
 urlLabel Netaffx Link:
 useScore 1
 type bed 6 .
 
 track affyHumanExon
 shortLabel Affy All Exon
 longLabel Affymetrix All Exon Chips
 group expression