6a2370294a64a6c3be2b2bf37e73540fde1adcf1 dschmelt Fri Jan 8 15:00:24 2021 -0800 Adding hg19 to annuncement No RM diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 94c3582..bd3e293 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -90,31 +90,32 @@ B.1.1.7 in USA - This track shows single-nucleotide variants and deletions from the SARS-CoV-2 reference genome in the B.1.1.7 consensus sequence and the first nine genome sequences in the United States that were assigned to B.1.1.7.
  • Antibody escape - This track contains mutations in the Spike protein that attenuate monoclonal and serum antibody neutralization.
  • S Antib Pept Array - This track shows intensities of a microarray spotted with short peptides derived from the S protein. Sera from both convalescent COVID-19 and control patients were screened on the peptide microarray for both IgG and IgM responses.
  • -COVID GWAS v4 (hg38) - This track set shows the results of the , +hg19) - This track set shows the results of the GWAS Data Release 4 (October 2020) from the COVID-19 Host Genetics Initiative (HGI) which aims to identify the genetic determinants of SARS-CoV-2 infection susceptibility, disease severity and outcomes.
  • Updated - Phylogenetic Tree and Variants from High-coverage Sequences in Public Databases - Updated from release 28-08-20 to 28-10-20. This track displays a phylogenetic tree inferred from SARS-CoV-2 genome sequences from GenBank, COG-UK and the China National Center for Bioinformation, and variants found in the sequences. Since this track is sourced from public databases, we can offer VCF files with sequence variants for