6a2370294a64a6c3be2b2bf37e73540fde1adcf1 dschmelt Fri Jan 8 15:00:24 2021 -0800 Adding hg19 to annuncement No RM diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 94c3582..bd3e293 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -90,31 +90,32 @@ <a target="_blank" href="/cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=lineageB_1_1_7_US"> B.1.1.7 in USA</a> - This track shows single-nucleotide variants and deletions from the SARS-CoV-2 reference genome in the B.1.1.7 consensus sequence and the first nine genome sequences in the United States that were assigned to B.1.1.7. <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=escape"> Antibody escape</a> - This track contains mutations in the Spike protein that attenuate monoclonal and serum antibody neutralization.</li> <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=pbmShanghai"> S Antib Pept Array</a> - This track shows intensities of a microarray spotted with short peptides derived from the S protein. Sera from both convalescent COVID-19 and control patients were screened on the peptide microarray for both IgG and IgM responses.</li> <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&c=chr1&g=covidHgiGwasR4Pval"> -COVID GWAS v4 (hg38)</a> - This track set shows the results of the <a target="_blank" +COVID GWAS v4 (hg38</a>, <a target="_blank" href="/cgi-bin/hgTrackUi?db=hg19&c=chr1&g=covidHgiGwasR4Pval"> +hg19</a>) - This track set shows the results of the <a target="_blank" href="https://www.covid19hg.org/blog/2020-11-24-covid-19-hgi-results-for-data-freeze-4-october-2020/"> GWAS Data Release 4 (October 2020)</a> from the <a target="_blank" href="https://www.covid19hg.org/"> COVID-19 Host Genetics Initiative (HGI)</a> which aims to identify the genetic determinants of SARS-CoV-2 infection susceptibility, disease severity and outcomes.</li> <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=sarsCov2PhyloPub"> Updated - Phylogenetic Tree and Variants from High-coverage Sequences in Public Databases</a> - Updated from release <b>28-08-20</b> to <b>28-10-20</b>. This track displays a phylogenetic tree inferred from SARS-CoV-2 genome sequences from <a href="https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=SARS-CoV-2,%20taxid:2697049" target="_blank">GenBank</a>, <a href="https://www.cogconsortium.uk/data/" target="_blank">COG-UK</a> and the <a href="https://bigd.big.ac.cn/ncov/release_genome" target="_blank">China National Center for Bioinformation</a>, and variants found in the sequences. Since this track is sourced from public databases, we can offer VCF files with sequence variants for <a href="https://hgdownload.soe.ucsc.edu/gbdb/wuhCor1/sarsCov2PhyloPub/"