e9f3044bd364e4224e05da2291fdbc126ba0895a
gperez2
  Tue Jan 5 16:24:11 2021 -0800
Code review edits to bigLolly.html Example 3 settings, refs #26742

diff --git src/hg/htdocs/goldenPath/help/bigLolly.html src/hg/htdocs/goldenPath/help/bigLolly.html
index b139af2..633585b 100755
--- src/hg/htdocs/goldenPath/help/bigLolly.html
+++ src/hg/htdocs/goldenPath/help/bigLolly.html
@@ -111,31 +111,35 @@
   file contains the chrom.sizes for the human hg38 assembly.</li>
   <li>
 Use the <code>bedToBigBed</code> utility to create a bigBed file from your sorted BED file, using 
 the <em>bigLollyExample2.bed</em> file and <em>chrom.sizes</em> files created above. </p> 
 <pre><code><strong>bedToBigBed</strong> -as=bigLollyExample2.as -type=bed9+1 bigLollyExample2.bed hg38.chrom.sizes bigLollyExample2.bb</code></pre></li>
 <p>
   <li>
 Move the newly created bigBed file (<em>bigLollyExample2.bb</em>) to a web-accessible http, https, or 
 ftp location. At this point you should have a URL to your data, such as &quot;https://institution.edu/bigLollyExample2.bb&quot;, and the file should be accessible outside of your institution/hosting providers network. For more information on where to host your data, please see the <a href="hgTrackHubHelp.html#Hosting">Hosting</a> section of the Track Hub Help documentation.</p>
   <pre><code>track type=bigLolly name=&quot;bigLolly Example Two: SNP data&quot; description=&quot;A second bigLolly file&quot; bigDataUrl=http://genome.ucsc.edu/goldenPath/help/examples/bigLollyExample2.bb lollyField=pValueLog visibility=full</code></pre></li>
   <li>
   Go to chr21:15,593,670-15,632,442 to see the data.</li>
 </ol>
 <h3>Example #3</h3>
 <p>
-In this example, you will create your own bigBed file to display as a bigLolly from an bed file with the size of the lollipop defined by an extra field, and the height defined by the score field. We'll also turn off the lollipop stems and add some labels and lines on the y axis.</p>
+In this example, you will create your own bigBed file to display as a bigLolly from a bed file with the size of the lollipop defined by
+an extra field (<code>lollySizeField=lollySize</code>) where the numbers in this field are similar to a radius and define circle size.
+To avoid large circles from being clipped, the setting <code>lollyMaxSize=10</code> ensures circles of size 10 fully display. Also, to
+turn off the lollipop stems, the setting <code>lollyNoStems=on</code> is added. Finally, the settings <code>yAxisLabel.0="0 on 30,30,190 0"</code>
+and <code>yAxisLabel.1="5 on 30,30,190 5"</code> adds labels and lines on the y axis where 30,30,190 defines the color.</p>
 <ol>
   <li>
   Save <a href="examples/bigLollyExample3.bed">this bed file</a> to your 
   computer.</li>
   <li>
   Save the autoSql files <a href="examples/bigLollyExample3.as"><em>bigLollyExample3.as</em></a> 
   to your computer.</li>
   <li>
   Download the <code>bedToBigBed</code>  
   <a href="http://hgdownload.soe.ucsc.edu/admin/exe/">utility</a>.</li>
   <li>
   Save the <a href="hg38.chrom.sizes"><em>hg38.chrom.sizes</em> text file</a> to your computer. This
   file contains the chrom.sizes for the human hg38 assembly.</li>
   <li>
 Use the <code>bedToBigBed</code> utility to create a bigBed file from your sorted BED file, using