b116999c2def25ea7669f7aaf99bd6b3873905aa gperez2 Wed Jan 6 12:23:00 2021 -0800 Code review edits, adding a target=_blank to GBiB link for consistency, refs #26742 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 8102535..975ea3e 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -90,32 +90,32 @@ href="/cgi-bin/hgTrackUi?db=hg38&c=chr10&g=clinvar">track description page</a>.</p> <p> We would link to thank <a target="_blank" href="https://www.ncbi.nlm.nih.gov/clinvar/">ClinVar</a> for making these data available, as well as Brian Joseph Raney, Ana Benet Pages, Gerardo Perez, and Lou Nassar for the development and release of this track.</p> <a name="121620"></a> <h2>Dec. 16, 2020 New In-Silico PCR feature for assembly hubs</h2> <p> We are excited to announce assembly hubs can now perform In-Silico PCR. Assembly hub developers have long been able to activate DNA and amino acid BLAT searches on their hubs by running gfServers from their institution, and now with the new isPcr setting, they can enable In-Silico PCR searches too using the same running gfServers. In-Silico PCR searches a sequence database with a pair of PCR primers, using an indexing strategy for fast performance to find target regions across the genome. Browser users without an institution to host gfServers can still benefit from this new feature by downloading and installing a virtual machine -<a href="help/gbib.html">Genome Browser in a Box (GBiB)</a>, and alternatively running gfServers on the GBiB, all -locally from a laptop. For more information see the <a href="http://genomewiki.ucsc.edu/index.php/Assembly_Hubs" +<a href="help/gbib.html"target="_blank">Genome Browser in a Box (GBiB)</a>, and alternatively running gfServers on the + GBiB, all locally from a laptop. For more information see the <a href="http://genomewiki.ucsc.edu/index.php/Assembly_Hubs" target="_blank">Assembly Hub Wiki</a> and the <a href="help/hubQuickStartAssembly.html" target="_blank">Quick Start Guide to Assembly Hubs</a>.</p> <p> We would like to thank Brian Raney and Gerardo Perez for their work on this release.</p> <a name="121520"></a> <h2>Dec. 15, 2020 New V35 GENCODE genes track for Human (hg19/GRCh37)</h2> <p> We are pleased to announce a new GENCODE Genes annotation track, which corresponds to <a href="http://www.ensembl.info/2020/08/20/ensembl-101-has-been-released/" target="_blank">Ensembl 101</a>, for the: <a target="_blank" href="../../cgi-bin/hgTrackUi?db=hg19&c=chr21&g=wgEncodeGencodeV35lift37">hg19/GRCh37</a> assembly. The GENCODE V35 annotations were mapped to hg38/GRCh38 and then back-mapped to the hg19/GRCh37 assembly. The gene set contains the following