66065d1a4070eda46e1f5d388e449a62f9e64c37 jnavarr5 Fri Jan 8 14:41:41 2021 -0800 Making the contact page an absolute link to make it work on the markdown file, refs #23297 diff --git src/hg/htdocs/goldenPath/help/gbic.html src/hg/htdocs/goldenPath/help/gbic.html index 41287d1..d7c83cd 100755 --- src/hg/htdocs/goldenPath/help/gbic.html +++ src/hg/htdocs/goldenPath/help/gbic.html @@ -61,31 +61,31 @@ </p> <p> Run the program as root, like this: </p> <pre><code>sudo bash browserSetup.sh install</code></pre> <p> The <code>install</code> command downloads and configures Apache, MySQL (MariaDB) and Ghostscript, copies the Genome Browser CGIs, and configures the mirror to load data remotely from UCSC. The <code>install</code> command must be run before any other command is used. </p> <p> -For mirror-specific help, please contact the Mirror Forum as listed on our <a href='../../contacts.html' title=''>contact page</a>. +For mirror-specific help, please contact the Mirror Forum as listed on our <a href='https://genome.ucsc.edu/contacts.html' title=''>contact page</a>. </p> <p> For an installation demonstration, see the <a href='https://www.youtube.com/watch?v=dcJERBVnjio' title=''>Genome Browser in the Cloud (GBiC) Introduction</a> video: </p> <p> <iframe width="560" height="315" src="https://www.youtube.com/embed/dcJERBVnjio?rel=0" frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen> </iframe> </p> @@ -138,32 +138,32 @@ <li>US server: TCP port 873 on hgdownload.soe.ucsc.edu (128.114.119.163)</li> <li>European server: TCP port 873 on hgdownload-euro.soe.ucsc.edu (129.70.40.99)</li> </ul></li> <li>Download HTML descriptions on the fly: <ul> <li>US server: TCP port 80 on hgdownload.soe.ucsc.edu (128.114.119.163)</li> <li>European server: TCP port 80 on hgdownload-euro.soe.ucsc.edu (129.70.40.99)</li> </ul></li> </ul> <h3 id="root-file-system-too-small-for-all-data">Root file system too small for all data</h3> <p> If you need to move data to another partition because the root file system is too small for all of -the assembly's data, the following steps will help complete the installation. First, do a minimal -installation with the browserSetup.sh script as described below, using just the “install” +the assembly's data, the following steps will help complete the installation. First, do a +minimal installation with the browserSetup.sh script as described below, using just the “install” argument. Then make symlinks to the directory that will contain the data, e.g. if your biggest filesystem is called “/big”: </p> <pre><code>sudo mv /var/lib/mysql /big/ sudo mv /gbdb /big/ sudo ln -s /big/mysql /var/lib/mysql sudo ln -s /big/gbdb /gbdb</code></pre> <p> Then use the “mirror” or “minimal” arguments to browserSetup.sh to rsync over the majority of the data. </p> <a name='gbic-commands'></a>