8ec6b110b2e1c9aad5133589c65e72ba7b478638
markd
  Fri Jan 8 08:04:17 2021 -0800
gencode mm39 load changes

diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk
index ae2ac28..5854798 100644
--- src/hg/makeDb/outside/gencode/gencodeLoad.mk
+++ src/hg/makeDb/outside/gencode/gencodeLoad.mk
@@ -23,45 +23,56 @@
 SHELL = bash -e
 export SHELLOPTS=pipefail
 
 ##
 # programs, etc
 ##
 mach = $(shell uname -m)
 
 ##
 # Release info and files from Sanger.
 # BEGIN EDIT THESE EACH RELEASE
 #
 # - ensemblPrevVersion is use to get chrom name mappings for pre-release,
 #   as this doesn't change between release.
 ##
-preRelease = no
-#preRelease = yes
+#preRelease = no
+preRelease = yes
 #db = hg38
-db = hg19
+#db = hg19
 #db = mm10
+db = mm39
 ifeq (${db},mm10)
     grcRefAssembly = GRCm38
     ver = M25
     prevVer = M24
     gencodeOrg = Gencode_mouse
     ftpReleaseSubdir = release_${ver}
     annGffTypeName = chr_patch_hapl_scaff.annotation
     ensemblVer = 100_38
     ensemblPrevVer = 99_38
     ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer}
+else ifeq (${db},mm39)
+    grcRefAssembly = GRCm39
+    ver = M26
+    prevVer = 
+    gencodeOrg = Gencode_mouse
+    ftpReleaseSubdir = release_${ver}
+    annGffTypeName = chr_patch_hapl_scaff.annotation
+    ensemblVer = 102_38
+    ensemblPrevVer =
+    ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer}
 else ifeq (${db},hg38)
     grcRefAssembly = GRCh38
     ver = 36
     prevVer = 35
     gencodeOrg = Gencode_human
     ftpReleaseSubdir = release_${ver}
     annGffTypeName = chr_patch_hapl_scaff.annotation
     ensemblVer = 102_38
     ensemblPrevVer = 101_38
     ensemblCDnaDb = homo_sapiens_cdna_${ensemblPrevVer}
 else ifeq (${db},hg19)
     grcRefAssembly = GRCh37
     verBase = 36
     ver = ${verBase}lift37
     backmapTargetVer = 19