2167996398e3f11c6eefa1c2b3676a7726a49e4f
angie
  Fri Feb 5 09:28:08 2021 -0800
Mention sources of public sequences so it doesn't sound like we only use GISAID sequences.

diff --git src/hg/hgPhyloPlace/hgPhyloPlace.c src/hg/hgPhyloPlace/hgPhyloPlace.c
index ca2ac83..d2485e7 100644
--- src/hg/hgPhyloPlace/hgPhyloPlace.c
+++ src/hg/hgPhyloPlace/hgPhyloPlace.c
@@ -156,30 +156,36 @@
     "} else { return true; } }"
 
 static void inputForm()
 /* Ask the user for FASTA or VCF. */
 {
 printf("<form action='%s' name='mainForm' method=POST enctype='multipart/form-data'>\n\n",
        "hgPhyloPlace");
 cartSaveSession(cart);
 char *db = "wuhCor1";
 cgiMakeHiddenVar("db", db);
 puts("  <div class='gbControl col-md-12'>");
 puts("<div class='readableWidth'>");
 puts("<p>Upload your SARS-CoV-2 sequence (FASTA or VCF file) to find the most similar\n"
      "complete, high-coverage samples from \n"
      "<a href='https://www.gisaid.org/' target='_blank'>GISAID</a>\n"
+     "or from public sequence databases ("
+     "<a href='https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=SARS-CoV-2,%20taxid:2697049' "
+     "target=_blank>NCBI Virus / GenBank</a>,\n"
+     "<a href='https://www.cogconsortium.uk/data/' target=_blank>COG-UK</a> and the\n"
+     "<a href='https://bigd.big.ac.cn/ncov/release_genome' "
+     "target=_blank>China National Center for Bioinformation</a>), "
      "and your sequence's placement in the phylogenetic tree generated by the\n"
      "<a href='https://github.com/roblanf/sarscov2phylo' target='_blank'>sarscov2phylo</a>\n"
      "pipeline.\n"
      "Placement is performed by\n"
      "<a href='https://github.com/yatisht/usher' target=_blank>"
      "Ultrafast Sample placement on Existing tRee (UShER)</a> "
      "(<a href='https://www.biorxiv.org/content/10.1101/2020.09.26.314971v1' target=_blank>"
      "Turakhia <em>et al.</em></a>).  UShER also generates local subtrees to show samples "
      "in the context of the most closely related sequences.  The subtrees can be visualized "
      "as Genome Browser custom tracks and/or using "
      "<a href='https://nextstrain.org' target=_blank>Nextstrain</a>'s interactive display "
      "which supports "
      "<a href='"NEXTSTRAIN_DRAG_DROP_DOC"' "
      "target=_blank>drag-and-drop</a> of local metadata that remains on your computer.</p>\n");
 puts("<p><b>Note:</b> "