05245678ceed92500c24bc6d3b322469df7c7f4f dschmelt Mon Feb 1 16:13:37 2021 -0800 Fixing typos #26836 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 2bc8d36..d1f7ab2 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -46,60 +46,64 @@ <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2021 archived news ============= --> <a name="2021"></a> <a name="012921"></a> <h2>Jan. 29, 2021 January 29th SARS-CoV-2 Update</h2> <p> The UCSC Genome Browser is proud to share our sixth round of genetics data for the SARS-CoV-2 virus (see our <a href="#040320">first</a>, <a href="#050420">second</a>, <a href="#080720">third</a>, -and <a href="#102120">fourth</a> and <a href="010921">fifth</a> releases). +<a href="#102120">fourth</a>, and <a href="010921">fifth</a> releases). These data focus on the virus's mutations, evolution, and antibody responses. As usual, these data are all open-access and interactive. For more information, -you can also visit out <a href="../covid19.html">COVID-19 home page</a>.</p> +you can also visit our <a href="../covid19.html">COVID-19 home page</a>.</p> <p> -Clicking on any of the track titles below will lead to the track description page, which includes additional information and allows for configuration of various display options. This release includes the following tracks:</p> +Clicking on any of the track titles below will lead to the track description page, +which includes additional information and allows for configuration of various +display options. This release includes the following tracks:</p> <ul> <li><a href="/cgi-bin/hgTrackUi?db=wuhCor1&g=sarsCov2PhyloPub"> Phylogeny: Public</a> - Updated 1/18/21 to contain more than 227k SARS-CoV-2 genome sequences from <a href="https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=SARS-CoV-2,%20taxid:2697049" target="_blank">GenBank</a>, <a href="https://www.cogconsortium.uk/data/" target="_blank">COG-UK</a>, the <a href="https://bigd.big.ac.cn/ncov/release_genome" target="_blank">China National Center for Bioinformation</a>, and an inferred phylogenetic tree. Since this track is sourced from public databases, we offer -<a href="https://en.wikipedia.org/wiki/Variant_Call_Format">VCF</a> files with mutations for download.</li> +<a href="https://en.wikipedia.org/wiki/Variant_Call_Format">VCF</a> files with mutations for +download.</li> <li><a href="/cgi-bin/hgTrackUi?db=wuhCor1&g=spikeMuts">Spike protein mutations</a> - Detailed annotations on spike protein mutations, based on community annotation from mid-January 2021 at <a href="https://covariants.org/" target="_blank"> CoVariants.org</a>, -supplemented by the Variants of SARS-CoV-2 page at Wikipeda. +supplemented by the Variants of SARS-CoV-2 page at Wikipedia. Linked information includes date first sequenced, notes of clinical significance and geographic incidence, and links to Nextstrain build, incidence charts and relevant publications. Mutations in this track include: H69-, D80Y, S98F, A222V, N439K, Y453F, S477N, E484, N501, D614G, A626S, P681H, A701B, V1122.</li> <li><a href="/cgi-bin/hgTrackUi?db=wuhCor1&g=abEscape">Antibody escape mutation</a> - Antibody binding scores from multiple -labs across all possible mutations of the Spike protein's receptor-binding domain (RBD).These data come -experiments using patient serum antibodies or monoclonal antibodies and a yeast-surface display system.</li> +labs across all possible mutations of the Spike protein's receptor-binding domain (RBD). These +data come from experiments using patient serum antibodies or monoclonal antibodies and a +yeast-surface display system.</li> </ul> <a name="012621"></a> <h2>Jan. 26, 2021 New Genome Browser: Dog, canFam5 (<em>Canis lupus familiaris</em>)</h2> <p> A genome browser is now available for the <em>Canis lupus familiaris</em> assembly released in May 2019 by the <a href="https://umich.edu/" target="_blank"> University of Michigan</a> (UMICH_Zoey_3.1). <h3>About the assembly:</h3> <ul> <li><b>UCSC Genome Browser assembly ID:</b> <a href="../../cgi-bin/hgGateway?db=canFam5" target="_blank">canFam5</a></li> <li><b>Sequencing/Assembly provider ID:</b> <a href="https://umich.edu/"> University of Michigan</a></li> <li><b>Assembly date:</b> May 2019</li> <li><B>Accession ID:</B> GCA_005444595.1</li>