e26e5b3e3ef27f2cdab7877d465e50b73f25508c
hiram
  Thu Feb 4 09:42:23 2021 -0800
Added rn7 rat refs #26682

diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf
index 7553170..9e510ea 100644
--- src/hg/makeDb/genbank/etc/genbank.conf
+++ src/hg/makeDb/genbank/etc/genbank.conf
@@ -739,30 +739,48 @@
 regenRn0.lift = /hive/data/genomes/regenRn0/jkStuff/nonBridged.lift
 regenRn0.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
 regenRn0.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
 regenRn0.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
 regenRn0.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
 regenRn0.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
 regenRn0.downloadDir = regenRn0
 regenRn0.refseq.mrna.xeno.load  = yes
 regenRn0.refseq.mrna.xeno.loadDesc = yes
 regenRn0.genbank.mrna.xeno.load  = yes
 regenRn0.perChromTables = no
 regenRn0.mgc = yes
 # regenRn0.upstreamGeneTbl = ensGene
 # regenRn0.upstreamMaf = multiz13way /hive/data/genomes/regenRn0/bed/multiz13way/species.list.txt
 
+# rn7 (rat GCF_015227675.2 mRatBN7.2)
+rn7.serverGenome = /hive/data/genomes/rn7/rn7.2bit
+rn7.ooc = /hive/data/genomes/rn7/jkStuff/rn7.11.ooc
+rn7.lift = /hive/data/genomes/rn7/jkStuff/rn7.gaps.lft
+rn7.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
+rn7.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
+rn7.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
+rn7.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
+rn7.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
+rn7.downloadDir = rn7
+rn7.refseq.mrna.xeno.load  = yes
+rn7.refseq.mrna.xeno.loadDesc = yes
+rn7.genbank.mrna.xeno.load  = yes
+rn7.perChromTables = no
+rn7.mgc = yes
+# rn7.upstreamGeneTbl = ensGene
+# rn7.upstreamMaf = multiz13way /hive/data/genomes/rn7/bed/multiz13way/species.list.txt
+
 # rn6 (rat)
 rn6.serverGenome = /hive/data/genomes/rn6/rn6.2bit
 rn6.ooc = /hive/data/genomes/rn6/jkStuff/rn6.11.ooc
 rn6.lift = /hive/data/genomes/rn6/jkStuff/rn6.nonBridged.lift
 rn6.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
 rn6.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
 rn6.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
 rn6.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
 rn6.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
 rn6.downloadDir = rn6
 rn6.refseq.mrna.xeno.load  = yes
 rn6.refseq.mrna.xeno.loadDesc = yes
 rn6.genbank.mrna.xeno.load  = yes
 rn6.perChromTables = no
 rn6.mgc = yes