e9ce87fb66d90958cbbdfdbec1a1a3c4556f0239
hiram
  Thu Feb 4 09:58:23 2021 -0800
NCBI ClonDB url is obsolete refs #21948

diff --git src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra
index 5c3e7a3..6de1bbb 100644
--- src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra
+++ src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra
@@ -1,471 +1,423 @@
 track cloneEndSuper
 compositeTrack on
 shortLabel Clone Ends
 longLabel Mapping of clone libraries end placements
 group map
 visibility hide
 type bed 3
 noInherit on
 dragAndDrop on
 subGroup1 source Source agencourt=Agencourt chori=Chori corielle=Coriell caltech=CalTech rpci=RPCI wibr=WIBR placements=Placements
 dimensions dimensionX=source
 sortOrder source=+
 
     track cloneEndABC10
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC10
     longLabel Agencourt fosmid library 10
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility pack
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 1
 
     track cloneEndABC11
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC11
     longLabel Agencourt fosmid library 11
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 2
 
     track cloneEndABC12
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC12
     longLabel Agencourt fosmid library 12
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 3
 
     track cloneEndABC13
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC13
     longLabel Agencourt fosmid library 13
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 4
 
     track cloneEndABC14
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC14
     longLabel Agencourt fosmid library 14
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 5
 
     track cloneEndABC16
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC16
     longLabel Agencourt fosmid library 16
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 6
 
     track cloneEndABC18
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC18
     longLabel Agencourt fosmid library 18
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 7
 
     track cloneEndABC20
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC20
     longLabel Agencourt fosmid library 20
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 8
 
     track cloneEndABC21
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC21
     longLabel Agencourt fosmid library 21
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 9
 
     track cloneEndABC22
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC22
     longLabel Agencourt fosmid library 22
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 10
 
     track cloneEndABC23
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC23
     longLabel Agencourt fosmid library 23
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 11
 
     track cloneEndABC24
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC24
     longLabel Agencourt fosmid library 24
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 12
 
     track cloneEndABC27
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC27
     longLabel Agencourt fosmid library 27
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 13
 
     track cloneEndABC7
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC7
     longLabel Agencourt fosmid library 7
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 14
 
     track cloneEndABC8
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC8
     longLabel Agencourt fosmid library 8
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 15
 
     track cloneEndABC9
     parent cloneEndSuper off
     subGroups source=agencourt
     shortLabel ABC9
     longLabel Agencourt fosmid library 9
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 16
 
     track cloneEndCH17
     parent cloneEndSuper on
     subGroups source=chori
     shortLabel CH17
     longLabel CHORI BAC hydatidiform mole
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 17
 
     track cloneEndCOR02
     parent cloneEndSuper off
     subGroups source=corielle
     shortLabel COR02
     longLabel NHGRI-CORIELLE CORIELL-02-F-39-40KB
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 18
 
     track cloneEndCOR2A
     parent cloneEndSuper off
     subGroups source=corielle
     shortLabel COR2A
     longLabel NHGRI-CORIELLE CORIELL-02A-F-39-40KB
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 19
 
     track cloneEndCTD
     parent cloneEndSuper on
     subGroups source=caltech
     shortLabel CTD
     longLabel CalTech BAC library D
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 20
 
     track cloneEndRP11
     parent cloneEndSuper on
     subGroups source=rpci
     shortLabel RP11
     longLabel RPCI BAC library 11
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 21
 
     track cloneEndWI2
     parent cloneEndSuper off
     subGroups source=wibr
     shortLabel WI2
     longLabel WIBR-2 Fosmid library
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 22
 
     track cloneEndmultipleMaps
     parent cloneEndSuper off
     subGroups source=placements
     shortLabel Multiple mappings
     longLabel Clone end placements that map to multiple locations in the genome
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 23
 
     track cloneEndbadEnds
     parent cloneEndSuper off
     subGroups source=placements
     shortLabel Bad end mappings
     longLabel Clone end placements dropped at UCSC, map distance 3X median library size
     colorByStrand 0,0,128 0,128,0
     type bed 12
     visibility hide
-    url https://www.ncbi.nlm.nih.gov/clone/?term=$$
-    urlLabel NCBI CloneDB:
     priority 24
 
     track cloneEndcoverageForward
     parent cloneEndSuper off
     subGroups source=placements
     shortLabel Coverage forward
     longLabel Clone end placements overlap coverage on the forward strand
     type bigWig 0 5377
     visibility full
     autoScale on
     alwaysZero on
     maxHeightPixels 128:35:16
     windowingFunction mean
     priority 25
 
     track cloneEndcoverageReverse
     parent cloneEndSuper off
     subGroups source=placements
     shortLabel Coverage reverse
     longLabel Clone end placements overlap coverage on the reverse strand
     type bigWig 0 4112
     visibility full
     negateValues 1
     alwaysZero on
     maxHeightPixels 128:35:16
     windowingFunction mean
     autoScale on
     priority 26
 
 searchTable cloneEndABC10
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC10-([0-9A-Z])+
 
 searchTable cloneEndABC11
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC11-([0-9A-Z])+
 
 searchTable cloneEndABC12
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC12-([0-9A-Z])+
 
 searchTable cloneEndABC13
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC13-([0-9A-Z])+
 
 searchTable cloneEndABC14
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC14-([0-9A-Z])+
 
 searchTable cloneEndABC16
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC16-([0-9A-Z])+
 
 searchTable cloneEndABC18
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC18-([0-9A-Z])+
 
 searchTable cloneEndABC20
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC20-([0-9A-Z])+
 
 searchTable cloneEndABC21
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC21-([0-9A-Z])+
 
 searchTable cloneEndABC22
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC22-([0-9A-Z])+
 
 searchTable cloneEndABC23
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC23-([0-9A-Z])+
 
 searchTable cloneEndABC24
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC24-([0-9A-Z])+
 
 searchTable cloneEndABC27
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC27-([0-9A-Z])+
 
 searchTable cloneEndABC7
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC7-([0-9A-Z])+
 
 searchTable cloneEndABC8
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC8-([0-9A-Z])+
 
 searchTable cloneEndABC9
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex ABC9-([0-9A-Z])+
 
 searchTable cloneEndCH17
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex CH17-([0-9A-Z])+
 
 searchTable cloneEndCOR02
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex COR02-DD0002([0-9A-Z_])+
 
 searchTable cloneEndCOR2A
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex COR2A-DD000([0-9A-Z_])+
 
 searchTable cloneEndCTD
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex CTD-([0-9A-Z])+
 
 searchTable cloneEndRP11
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex RP11-([0-9A-Z])+
 
 searchTable cloneEndWI2
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex [GW][2I][24][-8]([0-9A-Z])+
 
 searchTable cloneEndmultipleMaps
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex [ACGRW][BHIOPT2]([-0-9A-Z_])+
 
 searchTable cloneEndbadEnds
 searchType bed
 searchMethod prefix
 searchPriority 50
 termRegex [ACGRW][BHIOPT2]([-0-9A-Z_])+