e9ce87fb66d90958cbbdfdbec1a1a3c4556f0239 hiram Thu Feb 4 09:58:23 2021 -0800 NCBI ClonDB url is obsolete refs #21948 diff --git src/hg/makeDb/trackDb/mouse/cloneEnd.trackDb.ra src/hg/makeDb/trackDb/mouse/cloneEnd.trackDb.ra index 326e908..6e14d48 100644 --- src/hg/makeDb/trackDb/mouse/cloneEnd.trackDb.ra +++ src/hg/makeDb/trackDb/mouse/cloneEnd.trackDb.ra @@ -1,271 +1,245 @@ track cloneEndSuper compositeTrack on shortLabel Clone Ends longLabel Mapping of clone libraries end placements group map visibility hide type bed 3 noInherit on dragAndDrop on subGroup1 source Source bacLib=Bac_libraries fosmid=Fosmid_library micer=MICER placements=Placements dimensions dimensionX=source sortOrder source=+ track cloneEndB6Ng01 parent cloneEndSuper on subGroups source=bacLib shortLabel B6Ng01 longLabel C57BL/6N mouse BAC clone set colorByStrand 0,0,128 0,128,0 type bed 12 visibility pack - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 1 track cloneEndbMQ parent cloneEndSuper off subGroups source=bacLib shortLabel bMQ longLabel B94_mq1 129S7/SvEv ES cell BAC library colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 2 track cloneEndC3H parent cloneEndSuper off subGroups source=bacLib shortLabel C3H longLabel C3H iBAC library colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 3 track cloneEndCH29 parent cloneEndSuper off subGroups source=bacLib shortLabel CH29 longLabel CHORI-29 NOD/LtJ BAC library colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 4 track cloneEndDN parent cloneEndSuper off subGroups source=bacLib shortLabel DN longLabel DIL (Diabetes and Inflammation Laboratory) NOD BAC library colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 5 track cloneEndMHPN parent cloneEndSuper off subGroups source=micer shortLabel MHPN longLabel MICER 5'Hprt library colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 6 track cloneEndMHPP parent cloneEndSuper off subGroups source=micer shortLabel MHPP longLabel MICER 3'Hprt library colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 7 track cloneEndMSMg01 parent cloneEndSuper off subGroups source=bacLib shortLabel MSMg01 longLabel Mus musculus molossinus male BAC library 1 colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 8 track cloneEndRP23 parent cloneEndSuper off subGroups source=bacLib shortLabel RP23 longLabel RPCI-23 C57BL/6J female BAC library colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 9 track cloneEndRP24 parent cloneEndSuper off subGroups source=bacLib shortLabel RP24 longLabel RPCI-24 C57BL/6J male BAC library colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 10 track cloneEndWI1 parent cloneEndSuper off subGroups source=fosmid shortLabel WI1 longLabel WIBR-1 fosmid library colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 11 track cloneEndmultipleMaps parent cloneEndSuper off subGroups source=placements shortLabel Multiple mappings longLabel Clone end placements that map to multiple locations in the genome colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 12 track cloneEndbadEnds parent cloneEndSuper off subGroups source=placements shortLabel Bad end mappings longLabel Clone end placements dropped at UCSC, map distance 3X median library size colorByStrand 0,0,128 0,128,0 type bed 12 visibility hide - url https://www.ncbi.nlm.nih.gov/clone/?term=$$ - urlLabel NCBI CloneDB: priority 13 track cloneEndcoverageForward parent cloneEndSuper off subGroups source=placements shortLabel Coverage forward longLabel Clone end placements overlap coverage on the forward strand type bigWig 0 5377 visibility full autoScale on alwaysZero on windowingFunction mean priority 14 track cloneEndcoverageReverse parent cloneEndSuper off subGroups source=placements shortLabel Coverage reverse longLabel Clone end placements overlap coverage on the reverse strand type bigWig 0 4112 visibility full negateValues 1 alwaysZero on windowingFunction mean autoScale on priority 15 searchTable cloneEndB6Ng01 searchType bed searchMethod prefix searchPriority 50 termRegex B6Ng01-([0-9A-Z])+ searchTable cloneEndbMQ searchType bed searchMethod prefix searchPriority 50 termRegex [Bb]MQ-([0-9A-Z])+ searchTable cloneEndC3H searchType bed searchMethod prefix searchPriority 50 termRegex C3H-([0-9A-Z])+ searchTable cloneEndCH29 searchType bed searchMethod prefix searchPriority 50 termRegex CH29-([0-9A-Z])+ searchTable cloneEndDN searchType bed searchMethod prefix searchPriority 50 termRegex DN-([0-9A-Z])+ searchTable cloneEndMHPN searchType bed searchMethod prefix searchPriority 50 termRegex MHPN-([0-9A-Z])+ searchTable cloneEndMHPP searchType bed searchMethod prefix searchPriority 50 termRegex MHPP-([0-9A-Z])+ searchTable cloneEndMSMg01 searchType bed searchMethod prefix searchPriority 50 termRegex MSMg01-([0-9A-Z])+ searchTable cloneEndRP23 searchType bed searchMethod prefix searchPriority 50 termRegex RP23-([0-9A-Z])+ searchTable cloneEndRP24 searchType bed searchMethod prefix searchPriority 50 termRegex RP24-([0-9A-Z])+ searchTable cloneEndWI1 searchType bed searchMethod prefix searchPriority 50 termRegex [Ww][Ii]1-([0-9A-Z])+ searchTable cloneEndmultipleMaps searchType bed searchMethod prefix searchPriority 50 termRegex [BCDMRW][HIMNPS36]([-0-9A-Zg])+ searchTable cloneEndbadEnds searchType bed searchMethod prefix searchPriority 50 termRegex [BCDMRWb][HIMNPS36]([-0-9A-Zg])+