e5233678576cb7a09356141c4e016d2db87d5b4f max Wed Feb 3 05:19:28 2021 -0800 fixing GBIB space problems, step 1, by moving cgi-bin and htdocs to the /data partition (which is limited at 2TB, which will be step 2), refs #26866 diff --git src/browserbox/README.txt src/browserbox/README.txt index 26512ef..af62abc 100644 --- src/browserbox/README.txt +++ src/browserbox/README.txt @@ -1,25 +1,36 @@ kent/browserbox/ This directory contains the config files that are needed for the Genome Browser in a box. It should be possible to convert a Ubuntu 14 installation into a Genome Browser in a box by copying all these files into the root directory as sudo. (Redmine #11957) -See also the main gbib doc page: +The main file that is changed 90% of the time when GBIB changes is this one: + + ~/kent/src/browserbox/root/updateBrowser.sh + +It is the big script that is run on every start and also whenever the flag file +changes on hgdownload, after an hgdownload update (see the wiki documentation +below) + +See the main gbib doc page: http://genomewiki.ucsc.edu/genecats/index.php/Genome_Browser_in_a_Box_config +There are at least five wiki pages for every aspect of GBIB: development, +configuration, updates, release process and pushes. + The following symlinks are not in git and have to be set manually : usr/local/apache/htdocs/folders -> /media usr/local/apache/trash -> /data/trash/ usr/local/apache/userdata -> /data/userdata/ var/lib/mysql -> /data/mysql Change ownerships of /data/gbdb, /data/trash and /data/userdata to www-data and /data/mysql to mysql This tree does not include the trash cleaner binaries as they are > 5MB. Ask Hiram to install the trash cleaner if you need it fixed or changed. The directory clientInstall/ contains two small scripts that add the entry "genome.ucsc.local" to the local hosts file. One is written in VisualBasic for Windows, the other is in AppleScript for OSX. The AppleScript version also contains a firewall rule that redirects localhost:1234 to localhost:80, the