3091ba51499288c02b9bafb87b6ae937320c6344 max Mon Feb 1 08:20:52 2021 -0800 adding note about what the uniprot other track contains to uniprot docs, refs #26889 diff --git src/hg/makeDb/trackDb/uniprot.html src/hg/makeDb/trackDb/uniprot.html index 9d283c8..69006ce 100644 --- src/hg/makeDb/trackDb/uniprot.html +++ src/hg/makeDb/trackDb/uniprot.html @@ -33,60 +33,64 @@ <td>Protein domains with the comment "Extracellular".</td> </tr> <tr> <td>UniProt Transmembrane Domains</td> <td>Protein domains of the type "Transmembrane".</td> </tr> <tr> <td>UniProt Cytoplasmic Domains</td> <td>Protein domains with the comment "Cytoplasmic".</td> </tr> <tr> <td>UniProt Polypeptide Chains</td> <td>Polypeptide chain in mature protein after post-processing.</td> </tr> <tr> + <td>UniProt Regions of Interest</td> + <td>Regions that have been experimentally defined, such as the role of a region in mediating protein-protein interactions or some other biological process.</td> + </tr> + <tr> <td>UniProt Domains</td> <td>Protein domains, zinc finger regions and topological domains.</td> </tr> <tr> <td>UniProt Disulfide Bonds</td> <td>Disulfide bonds.</td> </tr> <tr> <td>UniProt Amino Acid Modifications</td> <td>Glycosylation sites, modified residues and lipid moiety-binding regions.</td> </tr> <tr> <td>UniProt Amino Acid Mutations</td> <td>Mutagenesis sites and sequence variants.</td> </tr> <tr> <td>UniProt Protein Primary/Secondary Structure Annotations</td> <td>Beta strands, helices, coiled-coil regions and turns.</td> </tr> <tr> <td>UniProt Sequence Conflicts</td> <td>Differences between Genbank sequences and the UniProt sequence.</td> </tr> <tr> <td>UniProt Repeats</td> <td>Regions of repeated sequence motifs or repeated domains.</td> </tr> <tr> <td>UniProt Other Annotations</td> - <td>All other annotations</td> + <td>All other annotations, e.g. compositional bias</td> </tr> </table> <p> For consistency, the subtrack "UniProt/SwissProt Variants" is a copy of the track "UniProt Variants" in the track group "Phenotype and Literature", or "Variation and Repeats", depending on the assembly. </p> <h2>Display Conventions and Configuration</h2> <p> Genomic locations of UniProt/SwissProt annotations are labeled with a short name for the type of annotation (e.g. "glyco", "disulf bond", "Signal peptide" etc.). A click on them shows the full annotation and provides a link to the UniProt/SwissProt record for more details. TrEMBL annotations are always shown in