715d9a47267e8a712604e63bda6d7c99622c7419
max
  Fri Jan 22 08:52:55 2021 -0800
adding cadd insertions and deletions, refs #18492

diff --git src/hg/makeDb/trackDb/human/cadd.ra src/hg/makeDb/trackDb/human/cadd.ra
index 862aaa9..8e7d733 100644
--- src/hg/makeDb/trackDb/human/cadd.ra
+++ src/hg/makeDb/trackDb/human/cadd.ra
@@ -1,45 +1,82 @@
+track caddSuper
+shortLabel CADD
+longLabel CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions
+superTrack on show
+type bed
+visibility hide
+group phenDis
+color 100,130,160
+
+
+        track caddIns
+        shortLabel Insertions
+        longLabel CADD Score: Insertions
+        type bigBed 9 +
+        parent caddSuper
+        visibility dense
+        bigDataUrl /gbdb/$D/cadd/ins.bb
+        mouseOverField $change $phred
+
+        track caddDel
+        shortLabel Deletions
+        longLabel CADD Score: Deletions
+        type bigBed 9 +
+        parent caddSuper
+        visibility dense
+        bigDataUrl /gbdb/$D/cadd/del.bb
+        mouseOverField $change $phred
+
 track cadd
 shortLabel CADD
-longLabel CADD 1.6 Score for all possible single-basepair variants (zoom in to show exact score on mouse over, same basepair = score 0.0)
+longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in to show exact score on mouse over, same basepair = score 0.0)
 type bigWig
-#superTrack on show
 compositeTrack on
-visibility hide
-maxHeightPixels 128:20:8
-maxWindowToQuery 500000
+parent caddSuper
+visibility dense
+#maxWindowToQuery 500000
 group phenDis
-viewLimits 0:30
 color 100,130,160
-viewLimitsMax 0:100
 
         track caddA
         shortLabel Mutation to A
         longLabel CADD Score: Mutation to A
         type bigWig
         parent cadd on
         visibility dense
-        bigDataUrl /gbdb/hg19/cadd/a.bw
+        bigDataUrl /gbdb/$D/cadd/a.bw
+        maxHeightPixels 128:20:8
+        viewLimits 0:30
+        viewLimitsMax 0:100
 
         track caddC
         shortLabel Mutation to C
         longLabel CADD Score: Mutation to C
         type bigWig
         parent cadd on
         visibility dense
-        bigDataUrl /gbdb/hg19/cadd/c.bw
+        bigDataUrl /gbdb/$D/cadd/c.bw
+        maxHeightPixels 128:20:8
+        viewLimits 0:30
+        viewLimitsMax 0:100
 
         track caddG
         shortLabel Mutation to G
         longLabel CADD Score: Mutation to G
         type bigWig
         parent cadd on
         visibility dense
-        bigDataUrl /gbdb/hg19/cadd/g.bw
+        bigDataUrl /gbdb/$D/cadd/g.bw
+        maxHeightPixels 128:20:8
+        viewLimits 0:30
+        viewLimitsMax 0:100
 
         track caddT
         shortLabel Mutation to T
         longLabel CADD Score: Mutation to T
         type bigWig
         parent cadd on
         visibility dense
-        bigDataUrl /gbdb/hg19/cadd/t.bw
+        bigDataUrl /gbdb/$D/cadd/t.bw
+        maxHeightPixels 128:20:8
+        viewLimits 0:30
+        viewLimitsMax 0:100