0c12430b872310f016b018db863d09697dc4deaf
gperez2
Tue Jan 26 11:49:25 2021 -0800
Code review edits to gnomAD track announcement, updated CGI links, and uncapitalized words, refs #26858
diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html
index 6a09479..9dacfa4 100755
--- src/hg/htdocs/goldenPath/newsarch.html
+++ src/hg/htdocs/goldenPath/newsarch.html
@@ -82,50 +82,48 @@
Jan. 22, 2021 Updates to gnomAD variation track (GRCh37/hg19)(GRCh38/hg38)
-We are pleased to announce updates to the
-gnomAD Variants super-track for the hg19/GRCh37
+We are pleased to announce updates to the gnomAD Variants super-track for the hg19/GRCh37
and hg38/GRCh38
+href="/cgi-bin/hgTrackUi?db=hg38&c=chrX&g=gnomadVariants">hg38/GRCh38
human assemblies.
- gnomAD v3.1 is now available and contains variants from 76,156 whole genomes (and no exomes),
all mapped to the GRCh38/hg38 reference sequence. 4,454 genomes were added to the number of
genomes in the previous v3 release. For more detailed information on gnomAD v3.1, see the related
blog post.
- The latest release (gnomAD 2.1.1) is also available for GRCh37/hg19 genome assembly. This release
contains variant data for 125,748 exomes and 15,708 whole genomes.
- Three filters are now available for our updated v2.1.1 (GRCh37/hg19) and gnomAD v3.1 (GRCh38/hg38) tracks,
by minor allele frequency (MAF), quality tags, annotation type, and variant type.
- Mouse hover over now displays details about each variant, including the affected gene(s), the variant type,
and annotation.
- - Following the conventions on the gnomAD browser, items are shaded according to their Annotation type: pLoF
- is red, Missense is orange, Synonymous is green, and Others are black.
+ Following the conventions on the gnomAD browser, items are shaded according to their annotation type: pLoF
+ is red, missense is orange, synonymous is green, and others are black.
We would like to thank the Genome Aggregation Database
(gnomAD) team at the BROAD institute and the UCSC Genome Browser team members Christopher Lee, Anna Benet-Pages,
Daniel Schmelter, and Gerardo Perez for developing and releasing these tracks.
Jan. 13, 2021 New GENCODE gene tracks: Human V35/V36 (hg19/hg38)
We are pleased to announce new GENCODE Gene annotation tracks, which correspond
to