618a2c33906032a84cc43cc9d975156525228535 kate Thu Jan 28 15:15:37 2021 -0800 Added all.joiner for GTEx V8. refs #26885 diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner index f90361b..5f30942 100644 --- src/hg/makeDb/schema/all.joiner +++ src/hg/makeDb/schema/all.joiner @@ -8655,30 +8655,51 @@ "GTEx sample ID" hgFixed.gtexSample.sampleId hgFixed.gtexSampleData.sample identifier gtexGeneId "GTEx gene ID (ENS gene)" hgFixed.gtexSampleData.geneId dupeOk hg19,hg38.gtexGene.geneId hg19,hg38.gtexGeneModel.name identifier gtexTissue "Short name for GTEx tissue (UCSC)" hgFixed.gtexSampleData.tissue dupeOk hgFixed.gtexTissue.name +identifier gtexDonorV8 +"GTEx V8 donor ID" + hgFixed.gtexDonorV8.name + hgFixed.gtexSampleV8.donor + +identifier gtexSampleV8 +"GTEx V8 sample ID" + hgFixed.gtexSampleV8.sampleId + hgFixed.gtexSampleDataV8.sample + +identifier gtexGeneIdV8 +"GTEx V8 gene ID (ENS gene)" + hgFixed.gtexSampleDataV8.geneId dupeOk + hg19,hg38.gtexGeneV8.geneId + hg19,hg38.gtexGeneModelV8.name + +identifier gtexTissueV8 +"Short name for GTEx V8 tissue (UCSC)" + hgFixed.gtexSampleDataV8.tissue dupeOk + hgFixed.gtexTissueV8.name + identifier chromAlias "Chromosome name correspondence to Ensembl, RefSeq, GenBank assemblies" $gbd.chromAlias.chrom dupeOk $gbd.chromInfo.chrom minCheck=0.99 # hgGeneGraph protein interaction viewer data tables identifier ggDoc "identifier of a publication, currently the PMID, an integer " hgFixed.ggDoc.docId minCheck=0.99 hgFixed.ggDocEvent.docId minCheck=0.99 hgFixed.ggEventDb.docIds separator=| minCheck=0.99 identifier ggEvent "an event (originally an NLP term) here is a protein interaction with a direction, from a curated database or from text mining."