Commits for markd

v410_preview to v410_preview2 (2021-01-25 to 2021-02-01) v410

12d0bf30d4a9fbe7aee60fdf9e7f8827116ba400 Wed Jan 27 17:49:12 2021 -0800

• allow overlap select to ignore non-standard columns in BED as well as genePred and PSL, as often come with bigBed
  • src/hg/utils/overlapSelect/chromAnn.c - lines changed 8, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/chromAnn.h - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/overlapSelect.c - lines changed 31, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/rowReader.c - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/rowReader.h - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/expected/extraBed3SelectTest.psl - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/expected/extraBed3Test.bed4+meta - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/expected/extraBed6SelectTest.psl - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/expected/extraBed6Test.bed6+meta - lines changed 9, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/expected/extraBigPslSelectTest.bigPsl.bed - lines changed 9, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/expected/extraBigPslTest.bigPsl.bed - lines changed 9, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/expected/extraGenePredTest.gp+meta - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/expected/extraPslTest.psl+meta - lines changed 9, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/input/transMap.bed4+meta - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/input/transMap.bed6+meta - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/input/transMap.bigPsl.bed - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/input/transMap.gp+meta - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/input/transMap.psl - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/input/transMap.psl+meta - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/makefile - lines changed 33, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/usage.txt - lines changed 12, context: html, text, full: html, text