e6a2e01522e05ba2f2db2b5da7e33f8bcc5a955d max Fri Jan 29 09:17:22 2021 -0800 adding uniprot interest track, refs #26889 diff --git src/hg/makeDb/trackDb/trackDb.uniprot.ra src/hg/makeDb/trackDb/trackDb.uniprot.ra index 40ecf09..9af77fc 100644 --- src/hg/makeDb/trackDb/trackDb.uniprot.ra +++ src/hg/makeDb/trackDb/trackDb.uniprot.ra @@ -40,30 +40,41 @@ priority 2 parent uniprot off visibility hide type bigPsl bigDataUrl /gbdb/$D/uniprot/unipAliTrembl.bb searchIndex name,acc urls acc="http://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" labelFields acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt,uniprotName mouseOverField protFullNames itemRgb off color 0,150,250 indelDoubleInsert on indelQueryInsert on baseColorTickColor contrastingColor + track unipFullSeq + shortLabel UniProt Proteins + longLabel Full UniProt Protein Sequences + priority 3 + parent uniprot + visibility dense + type bigBed 12 + + bigDataUrl /gbdb/wuhCor1/uniprot/unipAliSwissprot.bb + color 255,0,150 + itemRgb off + track unipLocSignal shortLabel Signal Peptide longLabel UniProt Signal Peptides priority 3 parent uniprot visibility dense type bigBed 12 + bigDataUrl /gbdb/$D/uniprot/unipLocSignal.bb color 255,0,150 itemRgb off track unipLocExtra shortLabel Extracellular longLabel UniProt Extracellular Domain priority 4 @@ -94,30 +105,40 @@ type bigBed 12 + bigDataUrl /gbdb/$D/uniprot/unipLocCytopl.bb color 255,150,0 itemRgb off track unipChain shortLabel Chains longLabel UniProt Mature Protein Products (Polypeptide Chains) priority 7 parent uniprot visibility dense type bigBed 12 + bigDataUrl /gbdb/$D/uniprot/unipChain.bb urls uniProtId="http://www.uniprot.org/uniprot/$$#ptm_processing" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" + track unipInterest + shortLabel Interest + longLabel UniProt Regions of Interest + priority 4 + parent uniprot + visibility dense + type bigBed 12 + + bigDataUrl /gbdb/$D/uniprot/unipInterest.bb + itemRgb off + track unipDomain shortLabel Domains longLabel UniProt Domains priority 8 parent uniprot visibility dense type bigBed 12 + bigDataUrl /gbdb/$D/uniprot/unipDomain.bb urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" track unipDisulfBond shortLabel Disulf. Bonds longLabel UniProt Disulfide Bonds priority 8 parent uniprot