8441e4b8e776dea862c62a466f765c8cd94b1e3d angie Mon Mar 1 00:55:04 2021 -0800 Add a TSV download file summarizing S (Spike) protein mutations, emphasizing antibody escape and Receptor Binding Domain mutations. Don't show too many buttons at the top. Try a little harder to find metadata for collapsed nodes in subtrees. diff --git src/hg/hgPhyloPlace/phyloPlace.h src/hg/hgPhyloPlace/phyloPlace.h index 9fc1f0c..531a047 100644 --- src/hg/hgPhyloPlace/phyloPlace.h +++ src/hg/hgPhyloPlace/phyloPlace.h @@ -4,31 +4,31 @@ #define _PHYLO_PLACE_H_ #include "common.h" #include "dnaseq.h" #include "hash.h" #include "linefile.h" #include "parsimonyProto.h" #include "phyloTree.h" #include "seqWindow.h" #include "trashDir.h" #define PHYLOPLACE_DATA_DIR "hgPhyloPlaceData" // Allow users to upload a lot of sequences, but put limits on how much detail we'll show and // how many custom tracks we'll create. -#define MAX_SUBTREE_BUTTONS 50 +#define MAX_SUBTREE_BUTTONS 5 #define MAX_SEQ_DETAILS 100 #define MAX_SUBTREE_CTS 10 #define NEXTSTRAIN_DRAG_DROP_DOC "https://docs.nextstrain.org/projects/auspice/en/latest/advanced-functionality/drag-drop-csv-tsv.html" struct treeChoices /* Phylogenetic tree versions for the user to choose from. */ { char **protobufFiles; // Mutation annotated tree files in protobuf format for UShER char **metadataFiles; // Sample metadata a la GISAID's nextmeta download option char **sources; // GISAID or public char **descriptions; // Menu labels to describe the options to the user int count; // Number of choices (and size of each array) };