4311905d25fea6367820a25ef089674680cfa37f
angie
  Wed Feb 24 13:03:14 2021 -0800
Nextstrain colors in auspice JSON: make uploaded samples stand out, add 20A.EU2.

diff --git src/hg/hgPhyloPlace/treeToAuspiceJson.c src/hg/hgPhyloPlace/treeToAuspiceJson.c
index c197b36..81cfacf 100644
--- src/hg/hgPhyloPlace/treeToAuspiceJson.c
+++ src/hg/hgPhyloPlace/treeToAuspiceJson.c
@@ -31,31 +31,32 @@
     struct slName *sln;
     for (sln = subtreeUserSampleIds->next;  sln != NULL;  sln = sln->next)
         fprintf(outF, ", %s", sln->name);
     }
 fputs("\", "
       "\"panels\": [ \"tree\"] , "
       "\"colorings\": [ "
       "  { \"key\": \"pangolin_lineage\", "
       "    \"title\": \"Pangolin lineage\", \"type\": \"categorical\" },"
       "  { \"key\": \"Nextstrain_clade\","
       "    \"scale\": [ [ \"19B\", \"#EC676D\" ], [ \"19A\", \"#F79E43\" ],"
       "        [ \"20A\", \"#B6D77A\" ], [ \"20C\", \"#8FD4ED\" ],"
       "        [ \"20B\", \"#A692C3\" ], [ \"20D\", \"#8020A0\" ],"
       "        [ \"20E (EU1)\", \"#44CC44\" ], [ \"20F\", \"#8822AA\" ],"
       "        [ \"20G\", \"#8888FF\" ], [ \"20H/501Y.V2\", \"#6666FF\" ],"
-      "        [ \"20I/501Y.V1\", \"#CC44EE\" ] ],"
+      "        [ \"20I/501Y.V1\", \"#CC44EE\" ], [ \"20A.EU2\", \"#448844\"  ], "
+      "        [ \"uploaded sample\", \"#FF0000\" ] ],"
       "    \"title\": \"Nextstrain Clade\", \"type\": \"categorical\" },"
       "  { \"key\": \"GISAID_clade\","
       "    \"scale\": [ [ \"S\", \"#EC676D\" ], [ \"L\", \"#F79E43\" ], [ \"O\", \"#F9D136\" ],"
       "        [ \"V\", \"#FAEA95\" ], [ \"G\", \"#B6D77A\" ], [ \"GH\", \"#8FD4ED\" ],"
       "        [ \"GR\", \"#A692C3\" ] ],"
       "    \"title\": \"GISAID Clade\", \"type\": \"categorical\" },"
       , outF);
 fprintf(outF, "  { \"key\": \"userOrOld\", "
         "    \"scale\": [ [ \"uploaded sample\", \"#CC0000\"] , [ \"%s\", \"#000000\"] ],"
         "    \"title\": \"Sample type\", \"type\": \"categorical\" }"
         , source);
 fputs("  ] , "
 //#*** Filters didn't seem to work... maybe something about the new fetch feature, or do I need to spcify in some other way?
 //#***      "\"filters\": [ \"GISAID_clade\", \"region\", \"country\", \"division\", \"author\" ], "
       "\"display_defaults\": { "