Commits for galt

v411_preview2 to v411_base (2021-02-22 to 2021-03-01) v411

93bdf148d3a0408d7e668190c5046fd3b34eef90 Tue Feb 23 22:32:50 2021 -0800

• Fixing some bugs in liftOver. Increased max fields from 64 to 256. Now it requires 3 or more fields. It detects if the field counts are not consistent for all rows. And it detects if there are too many fields. Fixes annoying bug in bed 1 or bed 2 that would confabulate output. refs #27023
  • src/hg/lib/liftOver.c - lines changed 27, context: html, text, full: html, text
  • src/hg/liftOver/tests/expected/bedPlus3-256.bed - lines changed 6, context: html, text, full: html, text
  • src/hg/liftOver/tests/input/bedPlus-256.bed - lines changed 6, context: html, text, full: html, text
  • src/hg/liftOver/tests/makefile - lines changed 9, context: html, text, full: html, text

c7e73e987cddcd4ad7df539e29910cb362293909 Wed Feb 24 10:48:48 2021 -0800

• MarkD recommended
  • src/hg/lib/liftOver.c - lines changed 1, context: html, text, full: html, text

87cb31210c7b6339c24c568397725460d594c4f0 Wed Feb 24 11:15:40 2021 -0800

• change c-style to js for curly braces, thanks Kate for catching.
  • src/hg/js/ddcl.js - lines changed 2, context: html, text, full: html, text

928a0042c83303e4dcce0fc204d32630c04f2d09 Wed Feb 24 23:06:16 2021 -0800

• Fixed existing bug causing "ASSERT: matChkBoxNormalize() called for dim ABC!". This occurred for old-style dimensions that were neither XY matrix nor filterComposite facets. refs #25012
  • src/hg/js/hui.js - lines changed 2, context: html, text, full: html, text

dec161384fad86ffbb284a47f302aa06f2399ed9 Thu Feb 25 11:45:47 2021 -0800

• Now that the limit was raised from 256 to 2048, this is not needed
  • src/hg/liftOver/tests/expected/bedPlus3-256.bed - lines changed 6, context: html, text, full: html, text
  • src/hg/liftOver/tests/input/bedPlus-256.bed - lines changed 6, context: html, text, full: html, text
  • src/hg/liftOver/tests/makefile - lines changed 9, context: html, text, full: html, text