File Changes for markd

v411_preview2 to v411_base (2021-02-22 to 2021-03-01) v411

• .gitignore
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    d8874392132c3e1fe3cd1850550aed635a5566dd Tue Feb 23 09:40:09 2021 -0800
    have git ignore js/react/*/compiled/ directories
• src/hg/featureBits/featureBits.c
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    2306b0cbe3778fe985fa284367228b35fd9dae78 Tue Feb 23 11:27:38 2021 -0800
    added featureBits option to only consider primary chromosomes using UCSC naming convention
• src/hg/hgc/hgc.c
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    7def57860cd7a395af34b06ff0fe04e32a7f3e97 Thu Feb 25 13:58:01 2021 -0800
    don't attempt to connect to database for blat results from user input, including hubs
• src/hg/makeDb/trackDb/marmoset/calJac4/catV2.html
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    6c276764fa27ce3afe69d59a4607601675e5fc1e Wed Feb 24 17:40:55 2021 -0800
    added CAT genes and supporting isoseq to calJac4; still waiting for documentation
• src/hg/makeDb/trackDb/marmoset/calJac4/trackDb.catV2.ra
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    6c276764fa27ce3afe69d59a4607601675e5fc1e Wed Feb 24 17:40:55 2021 -0800
    added CAT genes and supporting isoseq to calJac4; still waiting for documentation
• src/hg/makeDb/trackDb/marmoset/calJac4/trackDb.isoseq.ra
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    6c276764fa27ce3afe69d59a4607601675e5fc1e Wed Feb 24 17:40:55 2021 -0800
    added CAT genes and supporting isoseq to calJac4; still waiting for documentation
• src/hg/makeDb/trackDb/marmoset/calJac4/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    6c276764fa27ce3afe69d59a4607601675e5fc1e Wed Feb 24 17:40:55 2021 -0800
    added CAT genes and supporting isoseq to calJac4; still waiting for documentation
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
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    64d224c975cf63ad9f784e522ee6782cfe144abd Mon Feb 22 12:52:50 2021 -0800
    fixed gff3ToGenePred -refseqHacks to not SEGV on a CDS without a Name parameter
• src/hg/utils/gff3ToGenePred/tests/expected/ncbiProblemsTest.attrs
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    64d224c975cf63ad9f784e522ee6782cfe144abd Mon Feb 22 12:52:50 2021 -0800
    fixed gff3ToGenePred -refseqHacks to not SEGV on a CDS without a Name parameter
• src/hg/utils/gff3ToGenePred/tests/expected/ncbiProblemsTest.gp
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    64d224c975cf63ad9f784e522ee6782cfe144abd Mon Feb 22 12:52:50 2021 -0800
    fixed gff3ToGenePred -refseqHacks to not SEGV on a CDS without a Name parameter
• src/hg/utils/gff3ToGenePred/tests/input/ncbiProblems.gff3
  • lines changed 14, context: html, text, full: html, text
    64d224c975cf63ad9f784e522ee6782cfe144abd Mon Feb 22 12:52:50 2021 -0800
    fixed gff3ToGenePred -refseqHacks to not SEGV on a CDS without a Name parameter