Commits for hiram

v410_base to v411_preview (2021-02-08 to 2021-02-15) v411

b9f2d3c69ed82b01ee86bf36995abe72e8926be3 Mon Feb 8 12:33:18 2021 -0800

• add to chainDest list dbs used in mm39 chainNets refs #26815
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text

5c7ce8dbc0e4a3c5bfd55a08ad44b9fb60704aa9 Mon Feb 8 14:02:31 2021 -0800

• adding PanPan3 to the non-self chain list refs #26815
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text

4efd040664982d940ec8244cacb18724c08ac64f Mon Feb 8 14:04:43 2021 -0800

• add the make procedure for the assembly hub chainNet runs refs #26815
  • src/hg/makeDb/doc/mm39/lastzRuns.txt - lines changed 252, context: html, text, full: html, text

5634a1ee547d0d332bfe1ec37e164bfe896d6288 Mon Feb 8 17:23:03 2021 -0800

• honor the log transform and the negate option for mouseOver values refs #26505
  • src/hg/hgTracks/wigTrack.c - lines changed 7, context: html, text, full: html, text

481c4c69ad6d397389245f52c0da1477ab8703b1 Wed Feb 10 14:12:54 2021 -0800

• do NOT do log transform for mouse over value refs #26505
  • src/hg/hgTracks/wigTrack.c - lines changed 5, context: html, text, full: html, text

ade27c29a043212fc5b09a6f767e5dac6063a1ce Wed Feb 10 15:28:58 2021 -0800

• correctly adding symlinks to goldenPath bigZips genes directory no redmine
  • src/hg/utils/automation/doNcbiRefSeq.pl - lines changed 7, context: html, text, full: html, text

d36b68a1f3a42cb884d1b74f3c321429f4a132e4 Fri Feb 12 13:48:05 2021 -0800

• syntenic and rbest chain/net should have tag alpha refs #26584
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 2, context: html, text, full: html, text