0e016ca51069bf70ea5c9e08d7ef2fa4dd81a838
max
  Wed Feb 10 06:11:16 2021 -0800
adding makedoc for cadd track, refs #18492

diff --git src/hg/makeDb/doc/hg38/cadd.txt src/hg/makeDb/doc/hg38/cadd.txt
index 15a553e..778a032 100644
--- src/hg/makeDb/doc/hg38/cadd.txt
+++ src/hg/makeDb/doc/hg38/cadd.txt
@@ -1,5 +1,17 @@
 # CADD track, #18492, from CADD track hub
 Thu Dec  5 06:15:48 PST 2019 (max)
 mkdir -p /hive/data/genomes/{hg19,hg38}/bed/cadd/
-wget https://krishna.gs.washington.edu/download/CADD/bigWig/CADD_GRCh38-v1.4.bw -O /hive/data/genomes/hg38/bed/cadd/CADD-v1.4.bw
-ln -s /hive/data/genomes/hg38/bed/cadd/CADD-v1.4.bw /gbdb/hg38/bbi/CADD-v1.4.bw
+cd /hive/data/genomes/hg38/bed/cadd
+wget https://krishna.gs.washington.edu/download/CADD/v1.6/GRCh38/whole_genome_SNVs.tsv.gz
+wget https://krishna.gs.washington.edu/download/CADD/v1.6/GRCh38/gnomad.genomes.r3.0.indel.tsv.gz
+time python ~/kent/src/hg/makeDb/cadd/caddToWig.py
+time python ~/kent/src/hg/makeDb/cadd/caddToBed.py gnomad.genomes.r3.0.indel.tsv.gz
+bedSort del.bed del.bed
+bedSort ins.bed ins.bed
+bedToBigBed del.bed ../../chrom.sizes del.bb -type=bed9+ -tab -as=${HOME}/kent/src/hg/makeDb/cadd/cadd.as &
+bedToBigBed ins.bed ../../chrom.sizes ins.bb -type=bed9+ -tab -as=${HOME}/kent/src/hg/makeDb/cadd/cadd.as &
+wigToBigWig a.wig ../../chrom.sizes a.bw &
+wigToBigWig c.wig ../../chrom.sizes c.bw &
+wigToBigWig g.wig ../../chrom.sizes g.bw &
+wigToBigWig t.wig ../../chrom.sizes t.bw &
+# make sure that no error occured by checking the bw/bb files