3a27e971f06330b0b12552a8fa314279afbbf0b0
braney
  Thu Feb 18 11:53:54 2021 -0800
fix reference to mm39 to be $D

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
index e916765..5d6b907 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
@@ -1,170 +1,170 @@
 ##############################################################################
 # GCA_901343595v1_MONAX5 - woodchuck - Marmota monax - mammal
 ##############################################################################
 track chainNetGCA_901343595v1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 200.3
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb GCA_901343595v1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetGCA_901343595v1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     parent chainNetGCA_901343595v1
     spectrum on
 
         track chainGCA_901343595v1_MONAX5
         parent chainNetGCA_901343595v1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date) Chained Alignments
         type chain GCA_901343595v1
         html chainNet
 
     track chainNetGCA_901343595v1Viewnet
     shortLabel Net
     view net
     visibility dense
     parent chainNetGCA_901343595v1
 
         track netGCA_901343595v1_MONAX5
         parent chainNetGCA_901343595v1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign GCA_901343595v1 chainGCA_901343595v1_MONAX5
         html chainNet
 
 ##############################################################################
 # GCF_003668045.3 - Chinese hamster - Cricetulus griseus - taxId: 10029 - mammal
 ##############################################################################
 track chainNetGCF_003668045.3
 compositeTrack on
 shortLabel Chinese hamster Chain/Net
 longLabel Chinese hamster (Jun. 2020 GCF_003668045.3_CriGri-PICRH-1.0), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 100.1
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 chainLinearGap medium
 chainMinScore 3000
 matrixHeader A, C, G, T
 otherDb GCF_003668045.3
 html chainNet
 
     track chainNetGCF_003668045.3Viewchain
     shortLabel Chain
     view chain
     visibility pack
     parent chainNetGCF_003668045.3
     spectrum on
 
         track chainGCF_003668045.3
         parent chainNetGCF_003668045.3Viewchain
         subGroups view=chain
         shortLabel Chinese hamster Chain
         longLabel Chinese hamster (Jun. 2020 GCF_003668045.3_CriGri-PICRH-1.0) Chained Alignments
         type bigChain GCF_003668045.3
-        bigDataUrl /gbdb/mm39/bbi/chainNet/chainGCF_003668045.3.bb
-        linkDataUrl /gbdb/mm39/bbi/chainNet/chainGCF_003668045.3Link.bb
+        bigDataUrl /gbdb/$D//bbi/chainNet/chainGCF_003668045.3.bb
+        linkDataUrl /gbdb/$D//bbi/chainNet/chainGCF_003668045.3Link.bb
         html chainNet
 
     track mafNetGCF_003668045.3Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetGCF_003668045.3
 
         track netGCF_003668045.3
         parent mafNetGCF_003668045.3Viewnet
         subGroups view=net
         shortLabel Chinese hamster mafNet
         longLabel Chinese hamster (Jun. 2020 GCF_003668045.3_CriGri-PICRH-1.0) mafNet Alignment
         type bigMaf
-        bigDataUrl /gbdb/mm39/bbi/chainNet/mm39.GCF_003668045.3.net.bb
-        summary /gbdb/mm39/bbi/chainNet/mm39.GCF_003668045.3.net.summary.bb
+        bigDataUrl /gbdb/$D//bbi/chainNet/$D/.GCF_003668045.3.net.bb
+        summary /gbdb/$D//bbi/chainNet/$D/.GCF_003668045.3.net.summary.bb
         speciesOrder GCF_003668045.3
         html chainNet
 
 ##############################################################################
 # GCF_009829145.1 - lance-tailed manakin - Chiroxiphia lanceolata - taxId: 296741 - birds
 ##############################################################################
 track chainNetGCF_009829145.1
 compositeTrack on
 shortLabel lance-tailed manakin Chain/Net
 longLabel lance-tailed manakin (Jan. 2020 GCF_009829145.1_bChiLan1.pri), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 100.1
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 chainMinScore 3000
 chainLinearGap medium
 matrixHeader A, C, G, T
 otherDb GCF_009829145.1
 html chainNet
 
     track chainNetGCF_009829145.1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     parent chainNetGCF_009829145.1
     spectrum on
 
         track chainGCF_009829145.1
         parent chainNetGCF_009829145.1Viewchain
         subGroups view=chain
         shortLabel lance-tailed manakin Chain
         longLabel lance-tailed manakin (Jan. 2020 GCF_009829145.1_bChiLan1.pri) Chained Alignments
         type bigChain GCF_009829145.1
-        bigDataUrl /gbdb/mm39/bbi/chainNet/chainGCF_009829145.1.bb
-        linkDataUrl /gbdb/mm39/bbi/chainNet/chainGCF_009829145.1Link.bb
+        bigDataUrl /gbdb/$D//bbi/chainNet/chainGCF_009829145.1.bb
+        linkDataUrl /gbdb/$D//bbi/chainNet/chainGCF_009829145.1Link.bb
         html chainNet
 
     track mafNetGCF_009829145.1Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetGCF_009829145.1
 
         track netGCF_009829145.1
         parent mafNetGCF_009829145.1Viewnet
         subGroups view=net
         shortLabel lance-tailed manakin mafNet
         longLabel lance-tailed manakin (Jan. 2020 GCF_009829145.1_bChiLan1.pri) mafNet Alignment
         type bigMaf
-        bigDataUrl /gbdb/mm39/bbi/chainNet/mm39.GCF_009829145.1.net.bb
-        summary /gbdb/mm39/bbi/chainNet/mm39.GCF_009829145.1.net.summary.bb
+        bigDataUrl /gbdb/$D//bbi/chainNet/$D/.GCF_009829145.1.net.bb
+        summary /gbdb/$D//bbi/chainNet/$D/.GCF_009829145.1.net.summary.bb
         speciesOrder GCF_009829145.1
         html chainNet