71aa7746f5a5eeebf1262297a938c298467e74e1 hiram Mon Feb 15 12:14:55 2021 -0800 adding rn7 and moving all rats to euarchontoglires refs #26682 diff --git src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra index 50e762c..291904c 100644 --- src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra +++ src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra @@ -41,30 +41,300 @@ track chainNetMm39Viewnet shortLabel Net view net visibility full parent chainNetMm39 track netMm39 parent chainNetMm39Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign mm39 chainMm39 html chainNet ############################################################################## +# rn7 - rat - Rattus norvegicus - taxId: 10116 +############################################################################## +track chainNetRn7 +compositeTrack on +shortLabel $o_Organism Chain/Net +longLabel $o_Organism ($o_date), Chain and Net Alignments +subGroup1 view Views chain=Chain net=Net +dragAndDrop subTracks +visibility hide +group compGeno +noInherit on +priority 209 +color 0,0,0 +altColor 100,50,0 +type bed 3 +sortOrder view=+ +matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 +matrixHeader A, C, G, T +otherDb rn7 +chainMinScore 3000 +chainLinearGap medium +spectrum on +html chainNet + + track chainNetRn7Viewchain + shortLabel Chain + view chain + visibility pack + parent chainNetRn7 + spectrum on + + track chainRn7 + parent chainNetRn7Viewchain + subGroups view=chain + shortLabel $o_Organism Chain + longLabel $o_Organism ($o_date) Chained Alignments + type chain rn7 + html chainNet + + track chainNetRn7Viewnet + shortLabel Net + view net + visibility full + parent chainNetRn7 + + track netRn7 + parent chainNetRn7Viewnet + subGroups view=net + shortLabel $o_Organism Net + longLabel $o_Organism ($o_date) Alignment Net + type netAlign rn7 chainRn7 + html chainNet + +############################################################################## +# rn6 - rat - Rattus norvegicus - taxId: 10116 +############################################################################## +track chainNetRn6 +compositeTrack on +shortLabel $o_Organism Chain/Net +longLabel $o_Organism ($o_date), Chain and Net Alignments +subGroup1 view Views chain=Chain net=Net +dragAndDrop subTracks +visibility hide +group compGeno +noInherit on +priority 209 +color 0,0,0 +altColor 100,50,0 +type bed 3 +sortOrder view=+ +matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 +matrixHeader A, C, G, T +otherDb rn6 +chainMinScore 3000 +chainLinearGap medium +spectrum on +html chainNet + + track chainNetRn6Viewchain + shortLabel Chain + view chain + visibility pack + parent chainNetRn6 + spectrum on + + track chainRn6 + parent chainNetRn6Viewchain + subGroups view=chain + shortLabel $o_Organism Chain + longLabel $o_Organism ($o_date) Chained Alignments + type chain rn6 + html chainNet + + track chainNetRn6Viewnet + shortLabel Net + view net + visibility full + parent chainNetRn6 + + track netRn6 + parent chainNetRn6Viewnet + subGroups view=net + shortLabel $o_Organism Net + longLabel $o_Organism ($o_date) Alignment Net + type netAlign rn6 chainRn6 + html chainNet + +############################################################################## +# rn5 - rat - Rattus norvegicus - taxId: 10116 +############################################################################## +track chainNetRn5 +compositeTrack on +shortLabel $o_Organism Chain/Net +longLabel $o_Organism ($o_date), Chain and Net Alignments +subGroup1 view Views chain=Chain net=Net +dragAndDrop subTracks +visibility hide +group compGeno +noInherit on +priority 209 +color 0,0,0 +altColor 100,50,0 +type bed 3 +sortOrder view=+ +matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 +matrixHeader A, C, G, T +otherDb rn5 +chainMinScore 3000 +chainLinearGap medium +spectrum on +html chainNet + + track chainNetRn5Viewchain + shortLabel Chain + view chain + visibility pack + parent chainNetRn5 + spectrum on + + track chainRn5 + parent chainNetRn5Viewchain + subGroups view=chain + shortLabel $o_Organism Chain + longLabel $o_Organism ($o_date) Chained Alignments + type chain rn5 + html chainNet + + track chainNetRn5Viewnet + shortLabel Net + view net + visibility full + parent chainNetRn5 + + track netRn5 + parent chainNetRn5Viewnet + subGroups view=net + shortLabel $o_Organism Net + longLabel $o_Organism ($o_date) Alignment Net + type netAlign rn5 chainRn5 + html chainNet + +############################################################################## +# rn4 - rat - Rattus norvegicus - taxId: 10116 +############################################################################## +track chainNetRn4 +compositeTrack on +shortLabel $o_Organism Chain/Net +longLabel $o_Organism ($o_date), Chain and Net Alignments +subGroup1 view Views chain=Chain net=Net +dragAndDrop subTracks +visibility hide +group compGeno +noInherit on +priority 209 +color 0,0,0 +altColor 100,50,0 +type bed 3 +sortOrder view=+ +matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 +matrixHeader A, C, G, T +otherDb rn4 +chainMinScore 3000 +chainLinearGap medium +spectrum on +html chainNet + + track chainNetRn4Viewchain + shortLabel Chain + view chain + visibility pack + parent chainNetRn4 + spectrum on + + track chainRn4 + parent chainNetRn4Viewchain + subGroups view=chain + shortLabel $o_Organism Chain + longLabel $o_Organism ($o_date) Chained Alignments + type chain rn4 + html chainNet + + track chainNetRn4Viewnet + shortLabel Net + view net + visibility full + parent chainNetRn4 + + track netRn4 + parent chainNetRn4Viewnet + subGroups view=net + shortLabel $o_Organism Net + longLabel $o_Organism ($o_date) Alignment Net + type netAlign rn4 chainRn4 + html chainNet + +############################################################################## +# rn3 - rat - Rattus norvegicus - taxId: 10116 +############################################################################## +track chainNetRn3 +compositeTrack on +shortLabel $o_db Chain/Net +longLabel $o_Organism ($o_date), Chain and Net Alignments +subGroup1 view Views chain=Chain net=Net +dragAndDrop subTracks +visibility hide +group compGeno +noInherit on +priority 209 +color 0,0,0 +altColor 100,50,0 +type bed 3 +sortOrder view=+ +matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 +matrixHeader A, C, G, T +otherDb rn3 +chainMinScore 3000 +chainLinearGap medium +spectrum on +html chainNet + + track chainNetRn3Viewchain + shortLabel Chain + view chain + visibility pack + parent chainNetRn3 + spectrum on + + track chainRn3 + parent chainNetRn3Viewchain + subGroups view=chain + shortLabel $o_Organism Chain + longLabel $o_Organism ($o_date) Chained Alignments + type chain rn3 + html chainNet + + track chainNetRn3Viewnet + shortLabel Net + view net + visibility full + parent chainNetRn3 + + track netRn3 + parent chainNetRn3Viewnet + subGroups view=net + shortLabel $o_Organism Net + longLabel $o_Organism ($o_date) Alignment Net + type netAlign rn3 chainRn3 + html chainNet + +############################################################################## # fukDam1 - Damara mole rat - Fukomys damarensis - taxId: 885580 ############################################################################## track chainNetFukDam1 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 322.80 color 0,0,0 altColor 100,50,0 type bed 3