6ab36842251a96177c547bf37f5cc6157342eaa2
hiram
  Tue Feb 16 14:51:34 2021 -0800
eliminate a duplicate remove of tmp.chrom.sizes no redmine

diff --git src/hg/utils/automation/doSimpleRepeat.pl src/hg/utils/automation/doSimpleRepeat.pl
index 2325f74..c48e2a9 100755
--- src/hg/utils/automation/doSimpleRepeat.pl
+++ src/hg/utils/automation/doSimpleRepeat.pl
@@ -342,31 +342,31 @@
 if (\$status) then
   echo Uh-oh -- simpleRepeat.bed fails endsInLf.  Look at $partDir/ bed files.
   exit 1
 endif
 _EOF_
     );
   }
   $bossScript->add(<<_EOF_
 if ( -s simpleRepeat.bed ) then
   awk '{if (\$5 <= 12) print;}' simpleRepeat.bed > trfMask.bed
   awk 'BEGIN{OFS="\\t"}{name=substr(\$16,0,16);\$4=name;printf "%s\\n", \$0}' \\
     simpleRepeat.bed | sort -k1,1 -k2,2n > simpleRepeat.bed16.bed
   twoBitInfo $unmaskedSeq stdout | sort -k2nr > tmp.chrom.sizes
   bedToBigBed -tab -type=bed4+12 -as=\$HOME/kent/src/hg/lib/simpleRepeat.as \\
     simpleRepeat.bed16.bed tmp.chrom.sizes simpleRepeat.bb
-  rm -f tmp.chrom.sizes simpleRepeat.bed16.bed tmp.chrom.sizes
+  rm -f tmp.chrom.sizes simpleRepeat.bed16.bed
 else
   echo empty simpleRepeat.bed - no repeats found
 endif
 _EOF_
   );
   if ($chromBased) {
     $bossScript->add(<<_EOF_
 if ( -s trfMask.bed ) then
   splitFileByColumn trfMask.bed trfMaskChrom/
 else
   echo empty trfMask.bed - no repeats found
 endif
 _EOF_
     );
   }