059078006c994f45ba2fe5d5e588181aec9074c6 jnavarr5 Thu Feb 18 14:21:05 2021 -0800 Announcing the marmoset (calJac4) assembly, refs #24074 diff --git src/hg/htdocs/goldenPath/credits.html src/hg/htdocs/goldenPath/credits.html index 9568d6b..036914f 100755 --- src/hg/htdocs/goldenPath/credits.html +++ src/hg/htdocs/goldenPath/credits.html @@ -1908,30 +1908,49 @@ <p> The manatee sequence data may be freely downloaded, used in analyses, and repackaged in databases if the provider is properly acknowledged. Please cite this publication when using these data:</p> <p> Foote AD, Liu Y, Thomas GW, Vinař T, Alföldi, Deng J, Dugan S, van Elk CE, Hunter ME, Joshi V <em>et al</em>. <a href="https://www.nature.com/ng/journal/v47/n3/full/ng.3198.html" target="_blank">Convergent evolution of the genomes of marine mammals</a>. <em>Nat Genet</em>. 2015 Mar;47(3):272-5. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/25621460" target="_blank">25621460</a>; PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644735/" target="_blank">PMC4644735</a></p> <!-- Marmoset Credits --> <a name="marmoset_credits"></a> <h2>Marmoset genome</h2> <p> +The UCSC <a href="../../cgi-bin/hgGateway?db=calJac4">calJac4</a> Genome Browser displays data from +the May 2020 assembly of white-tufted-ear marmoset produced by the McDonnell Genome Institute at +Washington University with the following acknowledgments:</p> +<p> +<strong>Sequencing and assembly:</strong> +<a href="http://genome.wustl.edu/" target="_blank">McDonnell Genome Institute at Washington +University</a></p> +<p> +<strong>DNA Source:</strong> Wisconsin Primate Research Center</p> +<p> +<strong>UCSC Marmoset Genome Browser/Annotations:</strong> +<ul> + <li><a href="../../cgi-bin/hgGateway?db=calJac4">calJac4</a>: Hiram Clawson and Jairo Navarro</li> +</ul> +</p> + +<hr> + +<p> <strong>Sequencing and assembly:</strong> <a href="http://genome.wustl.edu/genomes/detail/callithrix-jacchus/" target="_blank">The Genome Institute at Washington University (WUSTL)</a>, St. Louis, MO, USA and <a href="https://www.hgsc.bcm.edu/" target="_blank">Baylor College of Medicine Human Genome Sequencing Center (BCM-HGSC)</a>, Houston, TX, USA </p> <p> <strong>DNA Source:</strong> Dr. Suzette Tardif, <a href="http://www.txbiomed.org/primate-research-center/" target="_blank">Southwest National Primate Research Center</a>, San Antonio, TX, USA </p> <p> <strong>CHORI-259 BAC library:</strong> Dr. Pieter DeJong, <a href="http://www.chori.org/" target="_blank">Children's Hospital Oakland Research Institute</a>, Oakland, CA, USA </p> <p> <strong>UCSC Marmoset Genome Browser/Annotations:</strong> </p> <ul> @@ -1947,30 +1966,41 @@ <p> These data were produced by The Genome Institute at WUSTL and the BCM-HGSC and can be downloaded <a href="http://genome.wustl.edu/pub/organism/Primates/Callithrix_jacchus/assembly/" target="_blank">here</a>.</p> <p> The marmoset sequence data may be freely downloaded, used in analyses, and repackaged in databases if the provider is properly acknowledged. Please cite this publication when using these data:</p> <p> Marmoset Genome Sequencing and Analysis Consortium. <a href="https://www.nature.com/ng/journal/v46/n8/full/ng.3042.html" target="_blank">The common marmoset genome provides insight into primate biology and evolution</a>. <em>Nat Genet</em>. 2014 Aug;46(8):850-7. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/25038751" target="_blank">25038751</a>; PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4138798/" target="_blank">PMC4138798</a></p> +<p> +Additionally, this publication discusses the calJac4 assembly:</p> +<p> +Wang W, Liu JY, Wang HF, Yang MY, Liu QY, Ding MX. +<a href="https://pubmed.ncbi.nlm.nih.gov/25329280/" target="_blank">The complete mitochondrial +genome of white-tufted-ear marmoset, Callithrix jacchus (Primates: Callitrichinae)</a>. +<em>Mitochondrial DNA A DNA Mapp Seq Anal</em>. 2016 May;27(3):1920-1. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/25329280" target="_blank">25329280</a> +</p> doi: <a href="https://doi.org/10.3109/19401736.2014.971287" +target="_blank">10.3109/19401736.2014.971287</a> + <!-- Megabat Credits --> <a name="megabat_credits"></a> <h2>Megabat genome</h2> <p> <strong>Funding:</strong> <a href="http://www.genome.gov" target="_blank">National Human Genome Research Institute</a> (NHGRI) </p> <p> <strong>Sequencing/Assembly: </strong> </p> <ul> <li> <a href="https://www.hgsc.bcm.edu/other-mammals/megabat-genome-project" target="_blank">Baylor College of Medicine Human Genome Sequencing Center (BCM-HGSC)</a>, Houston, TX, USA </li> <li> <a href="http://www.broadinstitute.org/scientific-community/science/projects/mammals-models/29-mammals-project" target="_blank">The Broad Institute</a>, Cambridge, MA, USA </li>