059078006c994f45ba2fe5d5e588181aec9074c6 jnavarr5 Thu Feb 18 14:21:05 2021 -0800 Announcing the marmoset (calJac4) assembly, refs #24074 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index f81e618..d56d01b 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,84 @@ <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2021 archived news ============= --> <a name="2021"></a> +<a name="021821"></a> +<h2>Feb. 18, 2021 New Genome Browser: Marmoset, calJac4</h2> +<p> +A genome browser is now available for the marmoset (<em>Callithrix jacchus</em>) assembly released +in May 2020 by the <a href="https://www.genome.wustl.edu/" target="_blank">McDonnell Genome +Institute at Washington University</a> (Callithrix_jacchus_cj1700_1.1).</p> + +<h3>About the assembly:</h3> +<ul> + <li><b>UCSC Genome Browser assembly ID:</b> + <a href="../../cgi-bin/hgGateway?db=calJac4" target="_blank">calJac4</a> + </li> + <li><b>Sequencing/Assembly provider ID:</b> + <a href="https://www.genome.wustl.edu/" target="_blank">McDonnell Genome Institute at + Washington University</a> + </li> + <li><b>Assembly date:</b> May 2020</li> + <li><b>Accession ID:</b> GCF_009663435.1</li> + <li><b>NCBI Genome ID:</b> + <a href="https://www.ncbi.nlm.nih.gov/genome/442" target="_blank">442</a> + (<em>Callithrix jacchus</em>) + </li> + <li><b>NCBI Assembly ID:</b> + <a href="https://www.ncbi.nlm.nih.gov/assembly/7157801" target="_blank">7157801</a> + </li> + <li><b>NCBI BioProject ID:</b> + <a href="https://www.ncbi.nlm.nih.gov/bioproject/566173" target="_blank">566173</a> + </li> + <li><b>NCBI BioSample ID:</b> + <a href="https://www.ncbi.nlm.nih.gov/biosample/SAMN12783337" target="_blank">SAMN12783337</a> + </li> + <li><b>Scaffold count:</b> 994</li> + <li><b>Total size:</b> 2,897,824,427</li> + <li> + <a href="../goldenPath/credits.html#marmoset_credits" target="_blank">Acknowledgments</a> + </li> +</ul> + +<h3>Data and Downloads:</h3> +<ul> + <li> + <a href="../goldenPath/credits.html#marmoset_use" target="_blank">Data use conditions and + restrictions</a> + </li> + <li> + <a href="../goldenPath/help/ftp.html" target="_blank">Rsync</a> and + <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/calJac4/" target="_blank">FTP</a> + </li> + <li> + <a href="http://hgdownload.soe.ucsc.edu/downloads.html#marmoset" target="_blank">Downloads + page</a> + </li> +</ul> + <a name="020321"></a> <h2>Feb. 3, 2021 New Exome Sequencing Probesets for human (hg38/hg19)</h2> <p> In our effort to better support personalized medicine and clinical genetics researchers, we are happy to announce the addition of 78 new whole exome sequencing (WES) probes and targets tracks from several major companies for human genomes hg38 and hg19. Our new tracks include data on WES kits from Illumina, Aligent, Roche, IDT, Twist, and MGI (BGI). Understanding exome sequencing probes and targets helps bring awareness to the different gene isoforms and alternative splicing that may be important for disease research. You can find these tracks under the "Mapping and Sequencing" group or go directly to the description pages of the "Exome Probesets" tracks below:</p> <ul> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=exomeProbesets">Exome Probesets for hg38</a></li> <li><a href="/cgi-bin/hgTrackUi?db=hg19&g=exomeProbesets">Exome Probesets for hg19</a></li> </ul>